Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4846 and GFF4847 are separated by 19 nucleotides GFF4847 and GFF4848 overlap by 4 nucleotides GFF4848 and GFF4849 overlap by 4 nucleotides
GFF4846 - Conjugative transfer protein TrbE, at 215,637 to 218,114
GFF4846
GFF4847 - Conjugative transfer protein TrbD, at 218,134 to 218,418
GFF4847
GFF4848 - Conjugative transfer protein TrbC, at 218,415 to 218,807
GFF4848
GFF4849 - Conjugative transfer protein TrbB, at 218,804 to 219,841
GFF4849
Position (kb) 218
219 Strain fitness (log2 ratio) -2
-1
0
1 at 217.141 kb on + strand, within GFF4846 at 217.337 kb on + strand, within GFF4846 at 217.338 kb on - strand, within GFF4846 at 217.338 kb on - strand, within GFF4846 at 217.338 kb on - strand, within GFF4846 at 217.538 kb on + strand, within GFF4846 at 217.538 kb on + strand, within GFF4846 at 217.539 kb on - strand, within GFF4846 at 217.558 kb on + strand, within GFF4846 at 217.558 kb on + strand, within GFF4846 at 217.558 kb on + strand, within GFF4846 at 217.558 kb on + strand, within GFF4846 at 217.558 kb on + strand, within GFF4846 at 217.559 kb on - strand, within GFF4846 at 217.575 kb on - strand, within GFF4846 at 217.696 kb on + strand, within GFF4846 at 217.696 kb on + strand, within GFF4846 at 217.696 kb on + strand, within GFF4846 at 217.741 kb on + strand, within GFF4846 at 217.741 kb on + strand, within GFF4846 at 217.741 kb on + strand, within GFF4846 at 217.741 kb on + strand, within GFF4846 at 217.742 kb on - strand, within GFF4846 at 217.742 kb on - strand, within GFF4846 at 217.742 kb on - strand, within GFF4846 at 217.742 kb on - strand, within GFF4846 at 217.760 kb on - strand, within GFF4846 at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.943 kb on + strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.944 kb on - strand at 218.021 kb on + strand at 218.021 kb on + strand at 218.022 kb on - strand at 218.022 kb on - strand at 218.022 kb on - strand at 218.119 kb on + strand at 218.119 kb on + strand at 218.120 kb on - strand at 218.135 kb on + strand at 218.136 kb on - strand at 218.136 kb on - strand at 218.163 kb on + strand, within GFF4847 at 218.164 kb on - strand, within GFF4847 at 218.419 kb on - strand at 218.419 kb on - strand at 218.777 kb on + strand at 218.902 kb on - strand at 218.902 kb on - strand at 219.119 kb on + strand, within GFF4849 at 219.119 kb on + strand, within GFF4849 at 219.119 kb on + strand, within GFF4849 at 219.120 kb on - strand, within GFF4849 at 219.245 kb on + strand, within GFF4849 at 219.245 kb on + strand, within GFF4849 at 219.246 kb on - strand, within GFF4849
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 217,141 + GFF4846 0.61 -0.2 217,337 + GFF4846 0.69 -0.1 217,338 - GFF4846 0.69 -0.4 217,338 - GFF4846 0.69 +0.1 217,338 - GFF4846 0.69 +0.4 217,538 + GFF4846 0.77 +0.4 217,538 + GFF4846 0.77 -0.0 217,539 - GFF4846 0.77 -0.1 217,558 + GFF4846 0.78 -0.2 217,558 + GFF4846 0.78 +0.3 217,558 + GFF4846 0.78 -0.1 217,558 + GFF4846 0.78 -1.1 217,558 + GFF4846 0.78 -0.2 217,559 - GFF4846 0.78 +0.7 217,575 - GFF4846 0.78 -0.4 217,696 + GFF4846 0.83 -1.2 217,696 + GFF4846 0.83 -0.3 217,696 + GFF4846 0.83 -0.6 217,741 + GFF4846 0.85 -0.8 217,741 + GFF4846 0.85 -0.5 217,741 + GFF4846 0.85 +1.2 217,741 + GFF4846 0.85 -0.7 217,742 - GFF4846 0.85 +0.3 217,742 - GFF4846 0.85 -0.8 217,742 - GFF4846 0.85 -1.6 217,742 - GFF4846 0.85 +0.9 217,760 - GFF4846 0.86 -0.6 217,943 + -0.1 217,943 + +0.5 217,943 + +0.7 217,943 + +0.1 217,943 + -0.7 217,943 + -0.3 217,944 - -0.2 217,944 - -0.5 217,944 - -0.3 217,944 - -0.3 218,021 + +0.7 218,021 + -0.9 218,022 - -0.3 218,022 - -1.0 218,022 - -0.7 218,119 + +0.3 218,119 + -0.4 218,120 - -0.3 218,135 + -1.2 218,136 - +0.7 218,136 - +0.1 218,163 + GFF4847 0.10 +1.4 218,164 - GFF4847 0.11 +0.2 218,419 - +0.8 218,419 - -0.6 218,777 + -0.3 218,902 - -0.7 218,902 - +0.9 219,119 + GFF4849 0.30 -0.9 219,119 + GFF4849 0.30 -0.1 219,119 + GFF4849 0.30 -1.8 219,120 - GFF4849 0.30 -0.4 219,245 + GFF4849 0.42 -0.3 219,245 + GFF4849 0.42 +0.3 219,246 - GFF4849 0.43 -0.1
Or see this region's nucleotide sequence