Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4815 and GFF4816 are separated by 54 nucleotides GFF4816 and GFF4817 are separated by 11 nucleotides GFF4817 and GFF4818 are separated by 57 nucleotides
GFF4815 - Glucose-fructose oxidoreductase (EC 1.1.99.28), at 186,299 to 187,474
GFF4815
GFF4816 - FIG01074109: hypothetical protein, at 187,529 to 188,959
GFF4816
GFF4817 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 188,971 to 189,750
GFF4817
GFF4818 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 189,808 to 190,809
GFF4818
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1 at 186.750 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.751 kb on - strand, within GFF4815 at 187.147 kb on - strand, within GFF4815 at 187.534 kb on - strand at 187.669 kb on - strand at 187.737 kb on + strand, within GFF4816 at 187.738 kb on - strand, within GFF4816 at 187.849 kb on - strand, within GFF4816 at 187.849 kb on - strand, within GFF4816 at 187.911 kb on + strand, within GFF4816 at 187.912 kb on - strand, within GFF4816 at 187.912 kb on - strand, within GFF4816 at 188.164 kb on - strand, within GFF4816 at 188.164 kb on - strand, within GFF4816 at 188.640 kb on + strand, within GFF4816 at 188.640 kb on + strand, within GFF4816 at 188.641 kb on - strand, within GFF4816 at 188.691 kb on + strand, within GFF4816 at 188.692 kb on - strand, within GFF4816 at 188.847 kb on + strand at 188.848 kb on - strand at 189.023 kb on + strand at 189.024 kb on - strand at 189.024 kb on - strand at 189.087 kb on - strand, within GFF4817 at 189.351 kb on - strand, within GFF4817 at 189.351 kb on - strand, within GFF4817 at 189.704 kb on + strand at 189.704 kb on + strand at 189.833 kb on + strand at 189.834 kb on - strand at 189.834 kb on - strand at 189.959 kb on + strand, within GFF4818
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 186,750 + GFF4815 0.38 -0.5 186,750 + GFF4815 0.38 -0.4 186,751 - GFF4815 0.38 -1.1 187,147 - GFF4815 0.72 +0.1 187,534 - -0.8 187,669 - +0.0 187,737 + GFF4816 0.15 -0.4 187,738 - GFF4816 0.15 +1.4 187,849 - GFF4816 0.22 +0.1 187,849 - GFF4816 0.22 +0.4 187,911 + GFF4816 0.27 +0.7 187,912 - GFF4816 0.27 -0.6 187,912 - GFF4816 0.27 +0.1 188,164 - GFF4816 0.44 +0.1 188,164 - GFF4816 0.44 -0.1 188,640 + GFF4816 0.78 +0.3 188,640 + GFF4816 0.78 -1.5 188,641 - GFF4816 0.78 +0.3 188,691 + GFF4816 0.81 -0.1 188,692 - GFF4816 0.81 -0.1 188,847 + +0.7 188,848 - -0.7 189,023 + -0.0 189,024 - +0.1 189,024 - -0.5 189,087 - GFF4817 0.15 +0.5 189,351 - GFF4817 0.49 +0.4 189,351 - GFF4817 0.49 -0.9 189,704 + -0.8 189,704 + +0.2 189,833 + -1.1 189,834 - -0.8 189,834 - -1.5 189,959 + GFF4818 0.15 -0.9
Or see this region's nucleotide sequence