Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4734 and GFF4735 are separated by 24 nucleotides GFF4735 and GFF4736 overlap by 4 nucleotides GFF4736 and GFF4737 are separated by 13 nucleotides
GFF4734 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 98,751 to 101,219
GFF4734
GFF4735 - Nitrate ABC transporter, ATP-binding protein, at 101,244 to 102,053
GFF4735
GFF4736 - Nitrate ABC transporter, permease protein, at 102,050 to 102,970
GFF4736
GFF4737 - Nitrate ABC transporter, substrate-binding protein, at 102,984 to 104,228
GFF4737
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.264 kb on + strand, within GFF4734 at 100.264 kb on + strand, within GFF4734 at 100.264 kb on + strand, within GFF4734 at 100.265 kb on - strand, within GFF4734 at 100.378 kb on + strand, within GFF4734 at 100.378 kb on + strand, within GFF4734 at 100.379 kb on - strand, within GFF4734 at 100.901 kb on - strand, within GFF4734 at 101.077 kb on + strand at 101.077 kb on + strand at 101.077 kb on + strand at 101.078 kb on - strand at 101.078 kb on - strand at 101.116 kb on + strand at 101.116 kb on + strand at 101.116 kb on + strand at 101.281 kb on + strand at 101.281 kb on + strand at 101.282 kb on - strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.318 kb on - strand at 101.749 kb on + strand, within GFF4735 at 101.749 kb on + strand, within GFF4735 at 101.749 kb on + strand, within GFF4735 at 101.749 kb on + strand, within GFF4735 at 101.750 kb on - strand, within GFF4735 at 101.750 kb on - strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 102.034 kb on + strand at 102.034 kb on + strand at 102.034 kb on + strand at 102.035 kb on - strand at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.283 kb on - strand, within GFF4736 at 102.360 kb on + strand, within GFF4736 at 102.361 kb on - strand, within GFF4736 at 102.361 kb on - strand, within GFF4736 at 102.675 kb on + strand, within GFF4736 at 102.675 kb on + strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 103.012 kb on + strand at 103.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 100,264 + GFF4734 0.61 +0.5 100,264 + GFF4734 0.61 -0.2 100,264 + GFF4734 0.61 -0.5 100,265 - GFF4734 0.61 -1.6 100,378 + GFF4734 0.66 -0.0 100,378 + GFF4734 0.66 +2.1 100,379 - GFF4734 0.66 +0.2 100,901 - GFF4734 0.87 +0.1 101,077 + -0.2 101,077 + -0.6 101,077 + -0.1 101,078 - -0.5 101,078 - -0.5 101,116 + +0.4 101,116 + +0.7 101,116 + -0.0 101,281 + +0.0 101,281 + -0.2 101,282 - +0.2 101,317 + -0.6 101,317 + +1.4 101,317 + -0.0 101,317 + -0.4 101,318 - -0.9 101,749 + GFF4735 0.62 -2.3 101,749 + GFF4735 0.62 -0.0 101,749 + GFF4735 0.62 -0.5 101,749 + GFF4735 0.62 +1.1 101,750 - GFF4735 0.62 +0.1 101,750 - GFF4735 0.62 -0.9 101,751 + GFF4735 0.63 -1.0 101,751 + GFF4735 0.63 -0.6 101,751 + GFF4735 0.63 -1.5 101,751 + GFF4735 0.63 +1.1 101,751 + GFF4735 0.63 -0.5 101,751 + GFF4735 0.63 -0.3 101,751 + GFF4735 0.63 -0.9 101,751 + GFF4735 0.63 -0.3 101,752 - GFF4735 0.63 -0.6 101,752 - GFF4735 0.63 +0.1 101,752 - GFF4735 0.63 -0.3 101,752 - GFF4735 0.63 -0.6 102,034 + +0.2 102,034 + +0.4 102,034 + -0.7 102,035 - -0.6 102,282 + GFF4736 0.25 +2.0 102,282 + GFF4736 0.25 +0.9 102,282 + GFF4736 0.25 -1.5 102,282 + GFF4736 0.25 -0.4 102,282 + GFF4736 0.25 -2.0 102,282 + GFF4736 0.25 +0.8 102,282 + GFF4736 0.25 -2.1 102,283 - GFF4736 0.25 -1.3 102,360 + GFF4736 0.34 -2.0 102,361 - GFF4736 0.34 -1.2 102,361 - GFF4736 0.34 +1.4 102,675 + GFF4736 0.68 -0.3 102,675 + GFF4736 0.68 +0.5 102,676 - GFF4736 0.68 +0.1 102,676 - GFF4736 0.68 +0.0 102,676 - GFF4736 0.68 +0.1 102,676 - GFF4736 0.68 -1.0 102,676 - GFF4736 0.68 +0.4 103,012 + -0.7 103,012 + +0.0
Or see this region's nucleotide sequence