Strain Fitness in Variovorax sp. SCN45 around GFF468

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF466 and GFF467 are separated by 32 nucleotidesGFF467 and GFF468 are separated by 143 nucleotidesGFF468 and GFF469 overlap by 31 nucleotidesGFF469 and GFF470 overlap by 4 nucleotides GFF466 - hypothetical protein, at 505,203 to 505,472 GFF466 GFF467 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 505,505 to 506,278 GFF467 GFF468 - Transcriptional regulator, LysR family, at 506,422 to 507,360 GFF468 GFF469 - hypothetical protein, at 507,330 to 507,869 GFF469 GFF470 - Transcriptional regulator, LysR family, at 507,866 to 508,840 GFF470 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2at 505.518 kb on + strandat 505.518 kb on + strandat 505.518 kb on + strandat 505.519 kb on - strandat 505.519 kb on - strandat 505.519 kb on - strandat 505.656 kb on + strand, within GFF467at 505.656 kb on + strand, within GFF467at 505.657 kb on - strand, within GFF467at 505.686 kb on + strand, within GFF467at 505.687 kb on - strand, within GFF467at 505.687 kb on - strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.813 kb on - strand, within GFF467at 505.813 kb on - strand, within GFF467at 505.813 kb on - strand, within GFF467at 505.825 kb on - strand, within GFF467at 505.942 kb on - strand, within GFF467at 505.942 kb on - strand, within GFF467at 506.160 kb on + strand, within GFF467at 506.160 kb on + strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.327 kb on + strandat 506.327 kb on + strandat 506.328 kb on - strandat 506.328 kb on - strandat 506.328 kb on - strandat 506.348 kb on + strandat 506.367 kb on + strandat 506.367 kb on + strandat 506.367 kb on + strandat 506.367 kb on + strandat 506.368 kb on - strandat 506.368 kb on - strandat 506.368 kb on - strandat 506.368 kb on - strandat 506.795 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.903 kb on - strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.121 kb on + strand, within GFF468at 507.121 kb on + strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.208 kb on + strand, within GFF468at 507.209 kb on - strand, within GFF468at 507.209 kb on - strand, within GFF468at 507.403 kb on + strand, within GFF469at 507.403 kb on + strand, within GFF469at 507.404 kb on - strand, within GFF469at 507.484 kb on + strand, within GFF469at 507.484 kb on + strand, within GFF469at 507.484 kb on + strand, within GFF469at 507.485 kb on - strand, within GFF469at 507.532 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.641 kb on - strand, within GFF469at 507.641 kb on - strand, within GFF469at 507.748 kb on + strand, within GFF469at 507.748 kb on + strand, within GFF469at 507.749 kb on - strand, within GFF469at 507.766 kb on + strand, within GFF469at 507.870 kb on - strandat 508.053 kb on + strand, within GFF470at 508.053 kb on + strand, within GFF470at 508.053 kb on + strand, within GFF470at 508.054 kb on - strand, within GFF470at 508.054 kb on - strand, within GFF470at 508.191 kb on + strand, within GFF470at 508.191 kb on + strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.192 kb on - strand, within GFF470

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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505,518 + +1.1
505,518 + -0.6
505,518 + -1.3
505,519 - +0.1
505,519 - -0.5
505,519 - -0.1
505,656 + GFF467 0.20 -0.0
505,656 + GFF467 0.20 -0.3
505,657 - GFF467 0.20 +0.6
505,686 + GFF467 0.23 +1.0
505,687 - GFF467 0.24 +0.5
505,687 - GFF467 0.24 -0.7
505,803 + GFF467 0.39 -0.3
505,803 + GFF467 0.39 -0.4
505,803 + GFF467 0.39 -0.8
505,803 + GFF467 0.39 -0.3
505,812 + GFF467 0.40 -1.3
505,812 + GFF467 0.40 -0.3
505,812 + GFF467 0.40 -0.4
505,812 + GFF467 0.40 -0.1
505,813 - GFF467 0.40 -0.3
505,813 - GFF467 0.40 +1.1
505,813 - GFF467 0.40 -0.1
505,825 - GFF467 0.41 +1.0
505,942 - GFF467 0.56 -0.7
505,942 - GFF467 0.56 +0.7
506,160 + GFF467 0.85 -0.9
506,160 + GFF467 0.85 -0.0
506,161 - GFF467 0.85 -0.3
506,161 - GFF467 0.85 -0.4
506,161 - GFF467 0.85 -0.3
506,161 - GFF467 0.85 -0.1
506,327 + +0.3
506,327 + -0.8
506,328 - -1.0
506,328 - -2.5
506,328 - -0.5
506,348 + +1.0
506,367 + -0.6
506,367 + -0.4
506,367 + -0.3
506,367 + -0.8
506,368 - +0.2
506,368 - -0.5
506,368 - -0.1
506,368 - -0.6
506,795 + GFF468 0.40 -0.5
506,902 + GFF468 0.51 -0.5
506,902 + GFF468 0.51 +0.7
506,902 + GFF468 0.51 -0.3
506,903 - GFF468 0.51 +0.8
506,965 + GFF468 0.58 -0.2
506,965 + GFF468 0.58 +1.3
506,965 + GFF468 0.58 +0.8
506,965 + GFF468 0.58 -0.0
506,965 + GFF468 0.58 +0.7
506,965 + GFF468 0.58 -0.8
506,965 + GFF468 0.58 -0.8
506,966 - GFF468 0.58 -0.6
506,966 - GFF468 0.58 -0.4
506,966 - GFF468 0.58 +0.3
506,966 - GFF468 0.58 -0.6
506,966 - GFF468 0.58 +0.6
506,966 - GFF468 0.58 +0.6
506,966 - GFF468 0.58 -0.1
506,966 - GFF468 0.58 -0.1
506,966 - GFF468 0.58 +0.5
506,966 - GFF468 0.58 +1.3
506,966 - GFF468 0.58 -1.9
507,073 + GFF468 0.69 -0.9
507,073 + GFF468 0.69 -0.6
507,073 + GFF468 0.69 -0.4
507,073 + GFF468 0.69 -0.4
507,073 + GFF468 0.69 +0.5
507,073 + GFF468 0.69 -0.2
507,073 + GFF468 0.69 -0.0
507,073 + GFF468 0.69 +0.3
507,073 + GFF468 0.69 -0.5
507,073 + GFF468 0.69 -0.0
507,073 + GFF468 0.69 +0.9
507,073 + GFF468 0.69 +0.1
507,073 + GFF468 0.69 -1.9
507,073 + GFF468 0.69 +0.4
507,073 + GFF468 0.69 -0.2
507,073 + GFF468 0.69 +0.1
507,074 - GFF468 0.69 -0.0
507,074 - GFF468 0.69 +0.0
507,074 - GFF468 0.69 +1.4
507,074 - GFF468 0.69 -0.8
507,074 - GFF468 0.69 +0.3
507,121 + GFF468 0.74 +0.6
507,121 + GFF468 0.74 -0.7
507,122 - GFF468 0.75 +1.3
507,122 - GFF468 0.75 -1.2
507,122 - GFF468 0.75 +1.9
507,122 - GFF468 0.75 -0.4
507,208 + GFF468 0.84 -1.7
507,209 - GFF468 0.84 -0.4
507,209 - GFF468 0.84 +0.2
507,403 + GFF469 0.14 -1.1
507,403 + GFF469 0.14 -0.6
507,404 - GFF469 0.14 +0.5
507,484 + GFF469 0.29 +1.3
507,484 + GFF469 0.29 -0.5
507,484 + GFF469 0.29 +0.4
507,485 - GFF469 0.29 +0.8
507,532 + GFF469 0.37 -0.5
507,640 + GFF469 0.57 -0.3
507,640 + GFF469 0.57 -0.6
507,640 + GFF469 0.57 +1.3
507,640 + GFF469 0.57 +1.3
507,640 + GFF469 0.57 +1.0
507,641 - GFF469 0.58 +0.7
507,641 - GFF469 0.58 -0.6
507,748 + GFF469 0.77 -0.2
507,748 + GFF469 0.77 +0.3
507,749 - GFF469 0.78 -0.7
507,766 + GFF469 0.81 -0.6
507,870 - -0.2
508,053 + GFF470 0.19 -0.9
508,053 + GFF470 0.19 -0.7
508,053 + GFF470 0.19 -0.2
508,054 - GFF470 0.19 +0.1
508,054 - GFF470 0.19 -0.7
508,191 + GFF470 0.33 -0.0
508,191 + GFF470 0.33 -0.6
508,192 - GFF470 0.33 +1.0
508,192 - GFF470 0.33 +0.1
508,192 - GFF470 0.33 +1.3
508,192 - GFF470 0.33 -0.7

Or see this region's nucleotide sequence