Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF460 and GFF461 are separated by 15 nucleotides GFF461 and GFF462 overlap by 4 nucleotides GFF462 and GFF463 are separated by 100 nucleotides
GFF460 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 498,601 to 500,139
GFF460
GFF461 - Enoyl-CoA hydratase (EC 4.2.1.17), at 500,155 to 500,955
GFF461
GFF462 - BUG/TctC family periplasmic protein, at 500,952 to 501,938
GFF462
GFF463 - Malonyl-CoA decarboxylase (EC 4.1.1.9), at 502,039 to 503,505
GFF463
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 500.039 kb on + strand at 500.040 kb on - strand at 500.148 kb on + strand at 500.148 kb on + strand at 500.148 kb on + strand at 500.149 kb on - strand at 500.149 kb on - strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.222 kb on + strand at 500.222 kb on + strand at 500.222 kb on + strand at 500.222 kb on + strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.228 kb on + strand at 500.228 kb on + strand at 500.229 kb on - strand at 500.402 kb on + strand, within GFF461 at 500.402 kb on + strand, within GFF461 at 500.523 kb on + strand, within GFF461 at 500.524 kb on - strand, within GFF461 at 501.170 kb on - strand, within GFF462 at 501.187 kb on + strand, within GFF462 at 501.187 kb on + strand, within GFF462 at 501.188 kb on - strand, within GFF462 at 501.188 kb on - strand, within GFF462 at 501.188 kb on - strand, within GFF462 at 501.219 kb on + strand, within GFF462 at 501.219 kb on + strand, within GFF462 at 501.219 kb on + strand, within GFF462 at 501.219 kb on + strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.220 kb on - strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.289 kb on + strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.290 kb on - strand, within GFF462 at 501.460 kb on + strand, within GFF462 at 501.460 kb on + strand, within GFF462 at 501.601 kb on + strand, within GFF462 at 501.665 kb on - strand, within GFF462 at 502.136 kb on + strand at 502.137 kb on - strand at 502.137 kb on - strand at 502.142 kb on + strand at 502.142 kb on + strand at 502.142 kb on + strand at 502.143 kb on - strand at 502.143 kb on - strand at 502.143 kb on - strand at 502.143 kb on - strand at 502.161 kb on - strand at 502.289 kb on + strand, within GFF463 at 502.290 kb on - strand, within GFF463 at 502.763 kb on + strand, within GFF463 at 502.763 kb on + strand, within GFF463 at 502.764 kb on - strand, within GFF463
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 500,039 + +0.2 500,040 - +0.3 500,148 + -0.1 500,148 + -0.1 500,148 + -1.2 500,149 - +0.4 500,149 - +0.1 500,151 + -1.5 500,151 + -1.1 500,151 + +0.0 500,151 + +0.8 500,151 + -1.0 500,151 + +0.3 500,152 - -1.0 500,152 - +2.0 500,152 - +0.1 500,152 - +0.1 500,152 - -1.0 500,222 + +1.3 500,222 + -0.7 500,222 + -0.4 500,222 + +0.4 500,223 - +0.5 500,223 - -0.8 500,223 - -0.3 500,223 - -1.1 500,223 - -0.5 500,223 - -0.5 500,228 + -0.1 500,228 + -0.4 500,229 - +0.5 500,402 + GFF461 0.31 +0.0 500,402 + GFF461 0.31 -0.5 500,523 + GFF461 0.46 +0.3 500,524 - GFF461 0.46 +0.2 501,170 - GFF462 0.22 -0.4 501,187 + GFF462 0.24 +0.3 501,187 + GFF462 0.24 -1.9 501,188 - GFF462 0.24 -0.5 501,188 - GFF462 0.24 -0.7 501,188 - GFF462 0.24 -0.4 501,219 + GFF462 0.27 -0.2 501,219 + GFF462 0.27 -0.7 501,219 + GFF462 0.27 -0.7 501,219 + GFF462 0.27 +0.5 501,220 - GFF462 0.27 +0.0 501,220 - GFF462 0.27 +0.1 501,220 - GFF462 0.27 -1.0 501,220 - GFF462 0.27 -0.2 501,220 - GFF462 0.27 -0.3 501,220 - GFF462 0.27 -0.8 501,220 - GFF462 0.27 +0.2 501,220 - GFF462 0.27 -0.5 501,289 + GFF462 0.34 +0.3 501,289 + GFF462 0.34 -0.9 501,289 + GFF462 0.34 +0.4 501,289 + GFF462 0.34 +0.6 501,289 + GFF462 0.34 -0.9 501,289 + GFF462 0.34 -0.2 501,289 + GFF462 0.34 -0.3 501,289 + GFF462 0.34 -0.7 501,290 - GFF462 0.34 -0.7 501,290 - GFF462 0.34 -0.0 501,290 - GFF462 0.34 +0.5 501,290 - GFF462 0.34 -0.5 501,290 - GFF462 0.34 -0.2 501,290 - GFF462 0.34 +0.2 501,290 - GFF462 0.34 -0.7 501,460 + GFF462 0.51 -1.3 501,460 + GFF462 0.51 -1.5 501,601 + GFF462 0.66 -0.3 501,665 - GFF462 0.72 -0.0 502,136 + -0.8 502,137 - +0.3 502,137 - +0.5 502,142 + -0.4 502,142 + +1.9 502,142 + +0.4 502,143 - +0.1 502,143 - -0.6 502,143 - +0.0 502,143 - -0.4 502,161 - -0.0 502,289 + GFF463 0.17 +1.7 502,290 - GFF463 0.17 -0.2 502,763 + GFF463 0.49 -0.1 502,763 + GFF463 0.49 +0.8 502,764 - GFF463 0.49 -0.7
Or see this region's nucleotide sequence