Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4613 and GFF4614 are separated by 9 nucleotides GFF4614 and GFF4615 are separated by 27 nucleotides GFF4615 and GFF4616 are separated by 26 nucleotides GFF4616 and GFF4617 overlap by 4 nucleotides
GFF4613 - Transcriptional regulator, LysR family, at 255,539 to 256,426
GFF4613
GFF4614 - Transcriptional regulator, AraC family, at 256,436 to 257,287
GFF4614
GFF4615 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 257,315 to 258,163
GFF4615
GFF4616 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 258,190 to 258,936
GFF4616
GFF4617 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 258,933 to 259,667
GFF4617
Position (kb) 257
258
259 Strain fitness (log2 ratio) -1
0
1
2 at 256.346 kb on + strand at 256.346 kb on + strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.353 kb on - strand at 256.353 kb on - strand at 256.398 kb on - strand at 256.398 kb on - strand at 256.398 kb on - strand at 256.438 kb on - strand at 257.020 kb on - strand, within GFF4614 at 257.020 kb on - strand, within GFF4614 at 257.107 kb on - strand, within GFF4614 at 257.172 kb on + strand, within GFF4614 at 257.173 kb on - strand, within GFF4614 at 257.196 kb on + strand, within GFF4614 at 257.196 kb on + strand, within GFF4614 at 257.487 kb on + strand, within GFF4615 at 257.488 kb on - strand, within GFF4615 at 257.488 kb on - strand, within GFF4615 at 257.716 kb on - strand, within GFF4615 at 257.728 kb on - strand, within GFF4615 at 257.754 kb on + strand, within GFF4615 at 257.755 kb on - strand, within GFF4615 at 257.755 kb on - strand, within GFF4615 at 257.925 kb on + strand, within GFF4615 at 257.925 kb on + strand, within GFF4615 at 257.925 kb on + strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 258.194 kb on + strand at 258.194 kb on + strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.537 kb on - strand, within GFF4616 at 258.936 kb on + strand at 258.937 kb on - strand at 258.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 256,346 + +0.3 256,346 + -0.8 256,347 - -0.8 256,347 - -1.3 256,347 - -0.9 256,347 - -0.6 256,347 - +0.4 256,347 - +0.5 256,347 - -0.7 256,353 - -0.4 256,353 - +0.5 256,398 - +0.4 256,398 - -0.4 256,398 - -0.6 256,438 - +0.7 257,020 - GFF4614 0.69 -0.3 257,020 - GFF4614 0.69 -0.8 257,107 - GFF4614 0.79 -0.1 257,172 + GFF4614 0.86 -0.4 257,173 - GFF4614 0.87 -1.1 257,196 + GFF4614 0.89 -0.5 257,196 + GFF4614 0.89 -0.1 257,487 + GFF4615 0.20 +0.4 257,488 - GFF4615 0.20 -0.3 257,488 - GFF4615 0.20 -0.2 257,716 - GFF4615 0.47 +0.4 257,728 - GFF4615 0.49 +0.5 257,754 + GFF4615 0.52 +0.2 257,755 - GFF4615 0.52 +0.8 257,755 - GFF4615 0.52 +0.9 257,925 + GFF4615 0.72 +0.1 257,925 + GFF4615 0.72 +0.1 257,925 + GFF4615 0.72 -0.7 257,926 - GFF4615 0.72 -0.7 257,926 - GFF4615 0.72 +0.2 257,926 - GFF4615 0.72 -0.2 257,926 - GFF4615 0.72 -0.1 258,194 + +2.1 258,194 + +0.3 258,195 - -0.4 258,195 - +0.9 258,195 - -0.6 258,195 - -0.5 258,195 - +0.1 258,195 - +2.0 258,195 - +0.3 258,195 - +0.9 258,195 - +0.6 258,195 - +0.7 258,537 - GFF4616 0.46 -0.1 258,936 + -0.8 258,937 - +0.7 258,937 - +1.3
Or see this region's nucleotide sequence