Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4591 and GFF4592 are separated by 1 nucleotides GFF4592 and GFF4593 are separated by 98 nucleotides GFF4593 and GFF4594 are separated by 153 nucleotides
GFF4591 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 231,949 to 232,617
GFF4591
GFF4592 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 232,619 to 233,377
GFF4592
GFF4593 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 233,476 to 234,372
GFF4593
GFF4594 - Aspartate ammonia-lyase (EC 4.3.1.1), at 234,526 to 235,998
GFF4594
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.550 kb on + strand, within GFF4591 at 232.550 kb on + strand, within GFF4591 at 232.551 kb on - strand at 232.551 kb on - strand at 232.551 kb on - strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.568 kb on + strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.569 kb on - strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.719 kb on + strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.720 kb on - strand, within GFF4592 at 232.740 kb on + strand, within GFF4592 at 232.740 kb on + strand, within GFF4592 at 232.741 kb on - strand, within GFF4592 at 232.741 kb on - strand, within GFF4592 at 232.782 kb on + strand, within GFF4592 at 232.782 kb on + strand, within GFF4592 at 232.908 kb on + strand, within GFF4592 at 232.908 kb on + strand, within GFF4592 at 232.908 kb on + strand, within GFF4592 at 232.908 kb on + strand, within GFF4592 at 232.909 kb on - strand, within GFF4592 at 232.909 kb on - strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.911 kb on + strand, within GFF4592 at 232.912 kb on - strand, within GFF4592 at 232.912 kb on - strand, within GFF4592 at 232.912 kb on - strand, within GFF4592 at 232.948 kb on - strand, within GFF4592 at 233.091 kb on + strand, within GFF4592 at 233.091 kb on + strand, within GFF4592 at 233.092 kb on - strand, within GFF4592 at 233.092 kb on - strand, within GFF4592 at 233.092 kb on - strand, within GFF4592 at 233.092 kb on - strand, within GFF4592 at 233.194 kb on + strand, within GFF4592 at 233.195 kb on - strand, within GFF4592 at 233.195 kb on - strand, within GFF4592 at 233.195 kb on - strand, within GFF4592 at 233.195 kb on - strand, within GFF4592 at 233.195 kb on - strand, within GFF4592 at 233.286 kb on + strand, within GFF4592 at 233.286 kb on + strand, within GFF4592 at 233.286 kb on + strand, within GFF4592 at 233.287 kb on - strand, within GFF4592 at 233.287 kb on - strand, within GFF4592 at 233.287 kb on - strand, within GFF4592 at 233.287 kb on - strand, within GFF4592 at 233.287 kb on - strand, within GFF4592 at 233.412 kb on + strand at 233.412 kb on + strand at 233.412 kb on + strand at 233.412 kb on + strand at 233.412 kb on + strand at 233.412 kb on + strand at 233.412 kb on + strand at 233.413 kb on - strand at 233.413 kb on - strand at 233.413 kb on - strand at 233.413 kb on - strand at 233.413 kb on - strand at 233.413 kb on - strand at 233.477 kb on + strand at 233.477 kb on + strand at 233.478 kb on - strand at 233.478 kb on - strand at 233.478 kb on - strand at 233.489 kb on + strand at 233.489 kb on + strand at 233.490 kb on - strand at 233.535 kb on + strand at 233.535 kb on + strand at 233.535 kb on + strand at 233.535 kb on + strand at 233.536 kb on - strand at 233.603 kb on + strand, within GFF4593 at 233.604 kb on - strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.008 kb on + strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.009 kb on - strand, within GFF4593 at 234.017 kb on + strand, within GFF4593 at 234.017 kb on + strand, within GFF4593 at 234.017 kb on + strand, within GFF4593 at 234.018 kb on - strand, within GFF4593 at 234.018 kb on - strand, within GFF4593 at 234.018 kb on - strand, within GFF4593 at 234.131 kb on + strand, within GFF4593 at 234.132 kb on - strand, within GFF4593 at 234.132 kb on - strand, within GFF4593 at 234.132 kb on - strand, within GFF4593 at 234.132 kb on - strand, within GFF4593 at 234.212 kb on + strand, within GFF4593 at 234.212 kb on + strand, within GFF4593 at 234.212 kb on + strand, within GFF4593 at 234.212 kb on + strand, within GFF4593 at 234.212 kb on + strand, within GFF4593 at 234.212 kb on + strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.213 kb on - strand, within GFF4593 at 234.233 kb on + strand, within GFF4593 at 234.233 kb on + strand, within GFF4593 at 234.233 kb on + strand, within GFF4593 at 234.234 kb on - strand, within GFF4593 at 234.234 kb on - strand, within GFF4593 at 234.234 kb on - strand, within GFF4593 at 234.234 kb on - strand, within GFF4593 at 234.404 kb on - strand at 234.407 kb on + strand at 234.407 kb on + strand at 234.408 kb on - strand at 234.408 kb on - strand at 234.420 kb on + strand at 234.420 kb on + strand at 234.549 kb on + strand at 234.549 kb on + strand at 234.549 kb on + strand at 234.549 kb on + strand at 234.550 kb on - strand at 234.550 kb on - strand at 234.604 kb on + strand at 234.604 kb on + strand at 234.604 kb on + strand at 234.604 kb on + strand at 234.604 kb on + strand at 234.604 kb on + strand at 234.604 kb on + strand at 234.605 kb on - strand at 234.605 kb on - strand at 234.605 kb on - strand at 234.740 kb on + strand, within GFF4594 at 235.248 kb on - strand, within GFF4594 at 235.248 kb on - strand, within GFF4594 at 235.248 kb on - strand, within GFF4594 at 235.248 kb on - strand, within GFF4594 at 235.268 kb on + strand, within GFF4594 at 235.269 kb on - strand, within GFF4594 at 235.269 kb on - strand, within GFF4594
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 232,550 + GFF4591 0.90 +2.2 232,550 + GFF4591 0.90 +0.2 232,551 - +0.1 232,551 - +0.4 232,551 - +0.6 232,568 + +1.2 232,568 + -0.1 232,568 + -0.1 232,568 + +0.7 232,568 + +0.2 232,568 + -0.6 232,568 + -1.7 232,568 + -1.0 232,568 + +0.1 232,568 + -0.8 232,568 + -0.9 232,568 + -0.6 232,568 + +0.2 232,568 + -1.1 232,568 + +0.1 232,568 + +0.2 232,568 + -1.2 232,568 + -0.7 232,568 + +0.7 232,568 + -0.3 232,568 + -0.7 232,569 - +1.7 232,569 - -0.0 232,569 - -0.4 232,569 - -0.7 232,569 - +1.1 232,569 - -0.1 232,569 - +0.3 232,569 - +0.1 232,569 - +0.1 232,569 - -0.1 232,569 - -0.6 232,569 - -0.2 232,569 - +0.4 232,569 - -0.6 232,569 - +0.3 232,592 + +0.3 232,592 + -0.7 232,592 + -0.1 232,592 + -0.7 232,593 - +1.0 232,593 - +0.1 232,719 + GFF4592 0.13 +0.4 232,719 + GFF4592 0.13 -0.6 232,719 + GFF4592 0.13 -0.3 232,719 + GFF4592 0.13 +0.0 232,719 + GFF4592 0.13 -0.1 232,719 + GFF4592 0.13 +1.1 232,719 + GFF4592 0.13 -0.4 232,719 + GFF4592 0.13 -0.7 232,719 + GFF4592 0.13 +0.0 232,720 - GFF4592 0.13 +0.7 232,720 - GFF4592 0.13 -0.3 232,720 - GFF4592 0.13 +0.8 232,720 - GFF4592 0.13 -0.8 232,720 - GFF4592 0.13 -0.1 232,720 - GFF4592 0.13 +0.0 232,720 - GFF4592 0.13 -1.1 232,720 - GFF4592 0.13 +0.3 232,720 - GFF4592 0.13 -1.1 232,720 - GFF4592 0.13 +0.7 232,740 + GFF4592 0.16 -0.3 232,740 + GFF4592 0.16 -0.1 232,741 - GFF4592 0.16 -0.3 232,741 - GFF4592 0.16 -0.3 232,782 + GFF4592 0.21 +0.0 232,782 + GFF4592 0.21 -0.1 232,908 + GFF4592 0.38 -0.2 232,908 + GFF4592 0.38 -0.3 232,908 + GFF4592 0.38 +0.3 232,908 + GFF4592 0.38 +0.2 232,909 - GFF4592 0.38 +1.7 232,909 - GFF4592 0.38 -0.1 232,911 + GFF4592 0.38 +0.8 232,911 + GFF4592 0.38 -0.4 232,911 + GFF4592 0.38 -0.8 232,911 + GFF4592 0.38 -0.4 232,911 + GFF4592 0.38 -0.5 232,911 + GFF4592 0.38 +0.4 232,911 + GFF4592 0.38 +0.8 232,911 + GFF4592 0.38 +0.2 232,912 - GFF4592 0.39 +0.2 232,912 - GFF4592 0.39 -0.2 232,912 - GFF4592 0.39 +0.3 232,948 - GFF4592 0.43 +0.2 233,091 + GFF4592 0.62 -1.7 233,091 + GFF4592 0.62 +0.4 233,092 - GFF4592 0.62 -0.0 233,092 - GFF4592 0.62 +0.5 233,092 - GFF4592 0.62 +0.7 233,092 - GFF4592 0.62 +0.7 233,194 + GFF4592 0.76 +0.0 233,195 - GFF4592 0.76 -0.5 233,195 - GFF4592 0.76 -0.3 233,195 - GFF4592 0.76 -0.3 233,195 - GFF4592 0.76 -1.0 233,195 - GFF4592 0.76 -0.1 233,286 + GFF4592 0.88 -0.7 233,286 + GFF4592 0.88 +1.4 233,286 + GFF4592 0.88 -0.2 233,287 - GFF4592 0.88 +0.3 233,287 - GFF4592 0.88 -0.9 233,287 - GFF4592 0.88 -0.7 233,287 - GFF4592 0.88 -0.2 233,287 - GFF4592 0.88 +0.1 233,412 + -0.3 233,412 + -1.6 233,412 + +0.7 233,412 + -0.3 233,412 + +0.0 233,412 + -0.0 233,412 + +2.7 233,413 - -0.7 233,413 - -1.2 233,413 - +1.3 233,413 - -0.6 233,413 - +0.3 233,413 - -0.9 233,477 + +0.3 233,477 + +0.8 233,478 - -0.4 233,478 - -0.8 233,478 - +0.6 233,489 + -0.7 233,489 + -0.5 233,490 - +0.5 233,535 + -0.7 233,535 + -0.9 233,535 + +0.3 233,535 + -0.4 233,536 - +0.3 233,603 + GFF4593 0.14 -0.9 233,604 - GFF4593 0.14 +0.5 234,008 + GFF4593 0.59 -0.5 234,008 + GFF4593 0.59 -1.0 234,008 + GFF4593 0.59 -0.1 234,008 + GFF4593 0.59 +0.6 234,008 + GFF4593 0.59 +0.2 234,008 + GFF4593 0.59 -0.1 234,008 + GFF4593 0.59 -0.7 234,008 + GFF4593 0.59 -1.0 234,008 + GFF4593 0.59 -0.4 234,008 + GFF4593 0.59 -0.5 234,008 + GFF4593 0.59 +0.7 234,008 + GFF4593 0.59 +0.4 234,008 + GFF4593 0.59 -0.7 234,009 - GFF4593 0.59 +0.5 234,009 - GFF4593 0.59 +0.1 234,009 - GFF4593 0.59 -0.1 234,009 - GFF4593 0.59 -0.2 234,009 - GFF4593 0.59 +0.1 234,009 - GFF4593 0.59 +0.0 234,009 - GFF4593 0.59 +1.5 234,009 - GFF4593 0.59 -0.5 234,009 - GFF4593 0.59 -1.7 234,009 - GFF4593 0.59 +0.1 234,009 - GFF4593 0.59 +0.2 234,017 + GFF4593 0.60 +0.2 234,017 + GFF4593 0.60 +0.9 234,017 + GFF4593 0.60 +0.1 234,018 - GFF4593 0.60 -0.3 234,018 - GFF4593 0.60 +0.8 234,018 - GFF4593 0.60 -1.0 234,131 + GFF4593 0.73 -0.0 234,132 - GFF4593 0.73 -0.2 234,132 - GFF4593 0.73 -1.9 234,132 - GFF4593 0.73 -0.1 234,132 - GFF4593 0.73 +0.7 234,212 + GFF4593 0.82 -0.6 234,212 + GFF4593 0.82 -0.3 234,212 + GFF4593 0.82 +0.7 234,212 + GFF4593 0.82 +0.8 234,212 + GFF4593 0.82 -0.6 234,212 + GFF4593 0.82 -0.3 234,213 - GFF4593 0.82 -0.3 234,213 - GFF4593 0.82 -1.7 234,213 - GFF4593 0.82 +0.1 234,213 - GFF4593 0.82 -0.9 234,213 - GFF4593 0.82 -0.0 234,213 - GFF4593 0.82 +2.7 234,213 - GFF4593 0.82 -0.3 234,213 - GFF4593 0.82 +0.0 234,213 - GFF4593 0.82 +0.1 234,233 + GFF4593 0.84 +0.0 234,233 + GFF4593 0.84 +0.2 234,233 + GFF4593 0.84 +0.1 234,234 - GFF4593 0.85 +0.7 234,234 - GFF4593 0.85 +0.4 234,234 - GFF4593 0.85 +0.6 234,234 - GFF4593 0.85 +0.9 234,404 - +0.1 234,407 + +0.1 234,407 + -1.4 234,408 - +1.3 234,408 - +0.4 234,420 + -0.0 234,420 + +0.1 234,549 + -0.1 234,549 + +1.8 234,549 + -0.1 234,549 + +0.1 234,550 - +1.2 234,550 - +0.2 234,604 + +0.3 234,604 + -0.4 234,604 + -0.2 234,604 + -0.5 234,604 + -2.4 234,604 + -0.3 234,604 + -0.5 234,605 - +0.1 234,605 - +0.7 234,605 - -0.1 234,740 + GFF4594 0.15 +0.4 235,248 - GFF4594 0.49 +0.1 235,248 - GFF4594 0.49 +1.1 235,248 - GFF4594 0.49 -0.2 235,248 - GFF4594 0.49 -0.5 235,268 + GFF4594 0.50 -0.1 235,269 - GFF4594 0.50 +0.2 235,269 - GFF4594 0.50 +0.3
Or see this region's nucleotide sequence