Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4581 and GFF4582 are separated by 352 nucleotides GFF4582 and GFF4583 overlap by 4 nucleotides GFF4583 and GFF4584 are separated by 94 nucleotides
GFF4581 - hypothetical protein, at 222,853 to 223,146
GFF4581
GFF4582 - TRAP-type C4-dicarboxylate transport system, small permease component, at 223,499 to 224,098
GFF4582
GFF4583 - TRAP-type C4-dicarboxylate transport system, large permease component, at 224,095 to 225,393
GFF4583
GFF4584 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 225,488 to 226,525
GFF4584
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.127 kb on - strand at 223.135 kb on + strand at 223.135 kb on + strand at 223.135 kb on + strand at 223.368 kb on + strand at 223.384 kb on - strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.406 kb on + strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.407 kb on - strand at 223.437 kb on + strand at 223.489 kb on - strand at 223.593 kb on + strand, within GFF4582 at 223.594 kb on - strand, within GFF4582 at 223.594 kb on - strand, within GFF4582 at 223.670 kb on + strand, within GFF4582 at 223.787 kb on + strand, within GFF4582 at 223.787 kb on + strand, within GFF4582 at 223.955 kb on + strand, within GFF4582 at 224.004 kb on + strand, within GFF4582 at 224.005 kb on - strand, within GFF4582 at 224.005 kb on - strand, within GFF4582 at 224.040 kb on - strand at 224.267 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.852 kb on - strand, within GFF4583 at 224.981 kb on - strand, within GFF4583 at 225.049 kb on + strand, within GFF4583 at 225.157 kb on + strand, within GFF4583 at 225.157 kb on + strand, within GFF4583 at 225.157 kb on + strand, within GFF4583 at 225.158 kb on - strand, within GFF4583 at 225.160 kb on + strand, within GFF4583 at 225.160 kb on + strand, within GFF4583 at 225.160 kb on + strand, within GFF4583 at 225.160 kb on + strand, within GFF4583 at 225.161 kb on - strand, within GFF4583 at 225.161 kb on - strand, within GFF4583 at 225.161 kb on - strand, within GFF4583 at 225.161 kb on - strand, within GFF4583 at 225.161 kb on - strand, within GFF4583 at 225.161 kb on - strand, within GFF4583 at 225.388 kb on + strand at 225.458 kb on + strand at 225.459 kb on - strand at 225.474 kb on + strand at 225.474 kb on + strand at 225.587 kb on + strand at 225.587 kb on + strand at 225.588 kb on - strand at 225.588 kb on - strand at 225.849 kb on - strand, within GFF4584 at 226.205 kb on + strand, within GFF4584 at 226.206 kb on - strand, within GFF4584
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 223,127 - +0.1 223,135 + +0.3 223,135 + +1.5 223,135 + -0.3 223,368 + -0.3 223,384 - -0.6 223,406 + -0.2 223,406 + -0.4 223,406 + -0.2 223,406 + +1.1 223,406 + -0.6 223,406 + -0.0 223,406 + -0.5 223,406 + -0.4 223,407 - +0.2 223,407 - +0.4 223,407 - +0.2 223,407 - +1.1 223,407 - -1.5 223,437 + -1.9 223,489 - -0.6 223,593 + GFF4582 0.16 -1.2 223,594 - GFF4582 0.16 -0.3 223,594 - GFF4582 0.16 -0.2 223,670 + GFF4582 0.28 -1.7 223,787 + GFF4582 0.48 +0.2 223,787 + GFF4582 0.48 +0.9 223,955 + GFF4582 0.76 -0.1 224,004 + GFF4582 0.84 +0.5 224,005 - GFF4582 0.84 -0.5 224,005 - GFF4582 0.84 -1.1 224,040 - -0.5 224,267 - GFF4583 0.13 -0.6 224,852 - GFF4583 0.58 -0.1 224,852 - GFF4583 0.58 +0.1 224,852 - GFF4583 0.58 -0.8 224,852 - GFF4583 0.58 -2.1 224,981 - GFF4583 0.68 -0.5 225,049 + GFF4583 0.73 -1.4 225,157 + GFF4583 0.82 -0.3 225,157 + GFF4583 0.82 -0.2 225,157 + GFF4583 0.82 -0.1 225,158 - GFF4583 0.82 -0.5 225,160 + GFF4583 0.82 -1.3 225,160 + GFF4583 0.82 -0.9 225,160 + GFF4583 0.82 -0.2 225,160 + GFF4583 0.82 +0.1 225,161 - GFF4583 0.82 +0.0 225,161 - GFF4583 0.82 +0.7 225,161 - GFF4583 0.82 -0.2 225,161 - GFF4583 0.82 -0.6 225,161 - GFF4583 0.82 -1.1 225,161 - GFF4583 0.82 -0.5 225,388 + +2.3 225,458 + +0.3 225,459 - +0.9 225,474 + -0.7 225,474 + +0.1 225,587 + -0.6 225,587 + +1.1 225,588 - -0.0 225,588 - -0.0 225,849 - GFF4584 0.35 -0.0 226,205 + GFF4584 0.69 +1.7 226,206 - GFF4584 0.69 -0.7
Or see this region's nucleotide sequence