Strain Fitness in Variovorax sp. SCN45 around GFF4502

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4501 and GFF4502 are separated by 29 nucleotidesGFF4502 and GFF4503 overlap by 4 nucleotidesGFF4503 and GFF4504 are separated by 49 nucleotides GFF4501 - Transcriptional regulator, LysR family, at 145,045 to 145,956 GFF4501 GFF4502 - Putative transmembrane protein, at 145,986 to 146,726 GFF4502 GFF4503 - RNA polymerase sigma factor, at 146,723 to 147,295 GFF4503 GFF4504 - FIG00953527: hypothetical protein, at 147,345 to 147,914 GFF4504 Position (kb) 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.319 kb on - strand, within GFF4501at 145.988 kb on - strandat 145.988 kb on - strandat 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.317 kb on + strand, within GFF4502at 146.318 kb on - strand, within GFF4502at 146.318 kb on - strand, within GFF4502at 146.318 kb on - strand, within GFF4502at 146.318 kb on - strand, within GFF4502at 146.318 kb on - strand, within GFF4502at 146.318 kb on - strand, within GFF4502at 146.498 kb on + strand, within GFF4502at 146.498 kb on + strand, within GFF4502at 146.498 kb on + strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.668 kb on + strandat 146.668 kb on + strandat 146.669 kb on - strandat 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.842 kb on - strand, within GFF4503at 146.842 kb on - strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 147.051 kb on + strand, within GFF4503at 147.051 kb on + strand, within GFF4503at 147.051 kb on + strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.186 kb on + strand, within GFF4503at 147.187 kb on - strand, within GFF4503at 147.187 kb on - strand, within GFF4503at 147.204 kb on + strand, within GFF4503at 147.204 kb on + strand, within GFF4503at 147.205 kb on - strand, within GFF4503at 147.205 kb on - strand, within GFF4503at 147.262 kb on - strandat 147.262 kb on - strandat 147.306 kb on + strandat 147.367 kb on + strandat 147.367 kb on + strandat 147.367 kb on + strandat 147.368 kb on - strandat 147.379 kb on + strandat 147.379 kb on + strandat 147.379 kb on + strandat 147.380 kb on - strandat 147.380 kb on - strandat 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.619 kb on + strand, within GFF4504at 147.620 kb on - strand, within GFF4504at 147.622 kb on + strand, within GFF4504at 147.622 kb on + strand, within GFF4504at 147.622 kb on + strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.724 kb on + strand, within GFF4504at 147.724 kb on + strand, within GFF4504at 147.724 kb on + strand, within GFF4504at 147.725 kb on - strand, within GFF4504at 147.725 kb on - strand, within GFF4504

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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145,153 + GFF4501 0.12 -0.4
145,153 + GFF4501 0.12 -0.3
145,153 + GFF4501 0.12 +0.9
145,153 + GFF4501 0.12 +1.1
145,153 + GFF4501 0.12 -0.4
145,153 + GFF4501 0.12 -1.1
145,154 - GFF4501 0.12 +0.7
145,154 - GFF4501 0.12 -0.3
145,154 - GFF4501 0.12 +0.6
145,154 - GFF4501 0.12 -0.9
145,154 - GFF4501 0.12 -0.5
145,154 - GFF4501 0.12 -0.7
145,319 - GFF4501 0.30 -0.4
145,988 - -0.5
145,988 - -0.4
146,317 + GFF4502 0.45 -0.5
146,317 + GFF4502 0.45 -0.6
146,317 + GFF4502 0.45 +0.0
146,317 + GFF4502 0.45 -0.5
146,317 + GFF4502 0.45 -0.4
146,317 + GFF4502 0.45 -0.1
146,317 + GFF4502 0.45 +1.5
146,317 + GFF4502 0.45 +0.2
146,318 - GFF4502 0.45 -0.3
146,318 - GFF4502 0.45 +0.1
146,318 - GFF4502 0.45 -1.6
146,318 - GFF4502 0.45 +1.3
146,318 - GFF4502 0.45 -0.5
146,318 - GFF4502 0.45 +1.4
146,498 + GFF4502 0.69 +0.7
146,498 + GFF4502 0.69 +0.2
146,498 + GFF4502 0.69 -0.6
146,499 - GFF4502 0.69 -0.4
146,499 - GFF4502 0.69 +0.6
146,499 - GFF4502 0.69 +0.9
146,499 - GFF4502 0.69 -0.5
146,668 + +0.2
146,668 + +0.2
146,669 - +0.2
146,835 + GFF4503 0.20 +0.3
146,835 + GFF4503 0.20 +1.3
146,835 + GFF4503 0.20 +1.3
146,835 + GFF4503 0.20 -0.4
146,835 + GFF4503 0.20 -1.4
146,835 + GFF4503 0.20 -0.3
146,835 + GFF4503 0.20 -0.2
146,835 + GFF4503 0.20 +0.3
146,835 + GFF4503 0.20 +0.9
146,835 + GFF4503 0.20 -0.8
146,835 + GFF4503 0.20 +1.1
146,835 + GFF4503 0.20 -0.6
146,835 + GFF4503 0.20 +0.1
146,836 - GFF4503 0.20 +0.3
146,836 - GFF4503 0.20 -0.5
146,836 - GFF4503 0.20 -1.0
146,836 - GFF4503 0.20 +1.0
146,836 - GFF4503 0.20 -1.3
146,836 - GFF4503 0.20 -0.2
146,836 - GFF4503 0.20 -1.1
146,836 - GFF4503 0.20 -0.6
146,836 - GFF4503 0.20 +0.3
146,836 - GFF4503 0.20 +0.0
146,836 - GFF4503 0.20 -0.6
146,836 - GFF4503 0.20 +0.3
146,836 - GFF4503 0.20 +0.2
146,836 - GFF4503 0.20 +0.2
146,836 - GFF4503 0.20 +0.3
146,836 - GFF4503 0.20 -0.5
146,836 - GFF4503 0.20 -0.0
146,841 + GFF4503 0.21 -0.6
146,841 + GFF4503 0.21 -0.0
146,841 + GFF4503 0.21 +0.7
146,841 + GFF4503 0.21 -0.3
146,841 + GFF4503 0.21 +0.9
146,841 + GFF4503 0.21 +0.2
146,841 + GFF4503 0.21 -0.3
146,842 - GFF4503 0.21 -1.3
146,842 - GFF4503 0.21 -0.8
146,940 + GFF4503 0.38 -0.2
146,940 + GFF4503 0.38 -0.4
146,940 + GFF4503 0.38 -0.7
146,940 + GFF4503 0.38 -0.2
146,940 + GFF4503 0.38 +0.2
146,941 - GFF4503 0.38 +0.1
146,941 - GFF4503 0.38 +0.3
146,941 - GFF4503 0.38 -0.3
146,941 - GFF4503 0.38 -0.6
146,941 - GFF4503 0.38 +1.1
146,941 - GFF4503 0.38 -0.5
146,941 - GFF4503 0.38 -0.5
147,051 + GFF4503 0.57 -0.2
147,051 + GFF4503 0.57 -0.7
147,051 + GFF4503 0.57 +0.3
147,052 - GFF4503 0.57 -0.1
147,052 - GFF4503 0.57 -0.2
147,052 - GFF4503 0.57 -0.3
147,052 - GFF4503 0.57 -0.7
147,052 - GFF4503 0.57 +0.7
147,186 + GFF4503 0.81 -0.9
147,187 - GFF4503 0.81 +1.3
147,187 - GFF4503 0.81 -0.1
147,204 + GFF4503 0.84 -0.7
147,204 + GFF4503 0.84 -0.9
147,205 - GFF4503 0.84 -1.1
147,205 - GFF4503 0.84 +0.1
147,262 - +2.3
147,262 - -1.1
147,306 + +0.4
147,367 + -0.1
147,367 + -3.0
147,367 + -0.3
147,368 - -0.7
147,379 + +0.5
147,379 + -0.0
147,379 + -0.3
147,380 - -0.4
147,380 - +0.7
147,469 + GFF4504 0.22 -0.1
147,469 + GFF4504 0.22 +0.1
147,469 + GFF4504 0.22 -0.3
147,469 + GFF4504 0.22 -1.7
147,469 + GFF4504 0.22 +0.4
147,469 + GFF4504 0.22 -1.4
147,469 + GFF4504 0.22 +0.2
147,470 - GFF4504 0.22 +0.3
147,470 - GFF4504 0.22 -0.1
147,470 - GFF4504 0.22 +0.1
147,470 - GFF4504 0.22 +0.7
147,470 - GFF4504 0.22 -0.7
147,470 - GFF4504 0.22 +0.3
147,470 - GFF4504 0.22 -1.3
147,470 - GFF4504 0.22 -0.1
147,470 - GFF4504 0.22 +0.3
147,470 - GFF4504 0.22 +1.2
147,470 - GFF4504 0.22 -0.1
147,470 - GFF4504 0.22 -0.7
147,470 - GFF4504 0.22 -0.7
147,470 - GFF4504 0.22 -0.0
147,470 - GFF4504 0.22 -0.3
147,619 + GFF4504 0.48 +0.5
147,620 - GFF4504 0.48 +0.5
147,622 + GFF4504 0.49 -0.3
147,622 + GFF4504 0.49 -0.0
147,622 + GFF4504 0.49 -0.5
147,623 - GFF4504 0.49 +0.5
147,623 - GFF4504 0.49 -1.2
147,623 - GFF4504 0.49 -0.5
147,623 - GFF4504 0.49 -1.1
147,623 - GFF4504 0.49 -0.2
147,724 + GFF4504 0.66 -0.5
147,724 + GFF4504 0.66 -0.6
147,724 + GFF4504 0.66 -0.3
147,725 - GFF4504 0.67 -0.3
147,725 - GFF4504 0.67 -0.3

Or see this region's nucleotide sequence