Strain Fitness in Variovorax sp. SCN45 around GFF440

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF438 and GFF439 overlap by 4 nucleotidesGFF439 and GFF440 are separated by 21 nucleotidesGFF440 and GFF441 overlap by 4 nucleotidesGFF441 and GFF442 overlap by 4 nucleotidesGFF442 and GFF443 overlap by 1 nucleotides GFF438 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 475,171 to 476,187 GFF438 GFF439 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 476,184 to 477,161 GFF439 GFF440 - CobN-like chelatase BtuS for metalloporphyrine salvage, at 477,183 to 481,196 GFF440 GFF441 - no description, at 481,193 to 481,546 GFF441 GFF442 - hypothetical transporter PduT for various metalloporphyrins, at 481,543 to 482,016 GFF442 GFF443 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 482,016 to 482,705 GFF443 Position (kb) 477 478 479 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2at 476.323 kb on + strand, within GFF439at 476.323 kb on + strand, within GFF439at 476.323 kb on + strand, within GFF439at 476.324 kb on - strand, within GFF439at 476.324 kb on - strand, within GFF439at 476.561 kb on - strand, within GFF439at 476.596 kb on + strand, within GFF439at 476.597 kb on - strand, within GFF439at 476.799 kb on + strand, within GFF439at 476.800 kb on - strand, within GFF439at 476.800 kb on - strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.034 kb on + strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.035 kb on - strand, within GFF439at 477.064 kb on + strandat 477.065 kb on - strandat 477.065 kb on - strandat 477.136 kb on + strandat 477.136 kb on + strandat 477.137 kb on - strandat 477.137 kb on - strandat 477.302 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.520 kb on + strandat 477.521 kb on - strandat 477.521 kb on - strandat 477.565 kb on + strandat 477.565 kb on + strandat 477.566 kb on - strandat 477.566 kb on - strandat 477.566 kb on - strandat 477.566 kb on - strandat 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.658 kb on + strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.659 kb on - strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.673 kb on + strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.674 kb on - strand, within GFF440at 477.782 kb on - strand, within GFF440at 477.823 kb on + strand, within GFF440at 477.904 kb on + strand, within GFF440at 477.904 kb on + strand, within GFF440at 477.905 kb on - strand, within GFF440at 477.905 kb on - strand, within GFF440at 477.961 kb on + strand, within GFF440at 477.994 kb on + strand, within GFF440at 478.091 kb on - strand, within GFF440at 478.091 kb on - strand, within GFF440at 478.114 kb on + strand, within GFF440at 478.114 kb on + strand, within GFF440at 478.114 kb on + strand, within GFF440at 478.115 kb on - strand, within GFF440at 478.115 kb on - strand, within GFF440at 478.165 kb on - strand, within GFF440at 478.204 kb on + strand, within GFF440at 478.205 kb on - strand, within GFF440at 478.205 kb on - strand, within GFF440at 478.205 kb on - strand, within GFF440at 478.702 kb on + strand, within GFF440at 478.703 kb on - strand, within GFF440at 478.756 kb on + strand, within GFF440at 478.756 kb on + strand, within GFF440at 478.757 kb on - strand, within GFF440at 478.757 kb on - strand, within GFF440at 478.757 kb on - strand, within GFF440at 478.757 kb on - strand, within GFF440at 478.771 kb on + strand, within GFF440at 478.771 kb on + strand, within GFF440at 478.772 kb on - strand, within GFF440at 479.128 kb on + strand, within GFF440at 479.129 kb on - strand, within GFF440at 479.129 kb on - strand, within GFF440at 479.129 kb on - strand, within GFF440at 479.203 kb on + strand, within GFF440at 479.203 kb on + strand, within GFF440at 479.203 kb on + strand, within GFF440at 479.203 kb on + strand, within GFF440at 479.203 kb on + strand, within GFF440at 479.204 kb on - strand, within GFF440at 479.204 kb on - strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.416 kb on + strand, within GFF440at 479.417 kb on - strand, within GFF440at 479.417 kb on - strand, within GFF440at 479.417 kb on - strand, within GFF440at 479.422 kb on + strand, within GFF440at 479.566 kb on + strand, within GFF440at 479.566 kb on + strand, within GFF440at 479.566 kb on + strand, within GFF440at 479.566 kb on + strand, within GFF440at 479.566 kb on + strand, within GFF440at 479.567 kb on - strand, within GFF440at 479.567 kb on - strand, within GFF440at 479.567 kb on - strand, within GFF440at 479.567 kb on - strand, within GFF440at 479.567 kb on - strand, within GFF440at 479.611 kb on + strand, within GFF440at 479.611 kb on + strand, within GFF440at 479.611 kb on + strand, within GFF440at 479.612 kb on - strand, within GFF440at 479.612 kb on - strand, within GFF440at 479.612 kb on - strand, within GFF440at 479.767 kb on + strand, within GFF440at 479.767 kb on + strand, within GFF440at 479.896 kb on + strand, within GFF440at 479.896 kb on + strand, within GFF440at 479.899 kb on + strand, within GFF440at 479.899 kb on + strand, within GFF440at 479.899 kb on + strand, within GFF440at 479.899 kb on + strand, within GFF440at 479.899 kb on + strand, within GFF440at 479.900 kb on - strand, within GFF440at 479.900 kb on - strand, within GFF440at 479.963 kb on - strand, within GFF440at 480.052 kb on + strand, within GFF440at 480.052 kb on + strand, within GFF440at 480.052 kb on + strand, within GFF440at 480.053 kb on - strand, within GFF440at 480.058 kb on + strand, within GFF440at 480.058 kb on + strand, within GFF440at 480.058 kb on + strand, within GFF440at 480.058 kb on + strand, within GFF440at 480.058 kb on + strand, within GFF440at 480.059 kb on - strand, within GFF440at 480.059 kb on - strand, within GFF440at 480.059 kb on - strand, within GFF440at 480.059 kb on - strand, within GFF440at 480.059 kb on - strand, within GFF440at 480.059 kb on - strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.238 kb on + strand, within GFF440at 480.238 kb on + strand, within GFF440at 480.238 kb on + strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.466 kb on + strand, within GFF440at 480.467 kb on - strand, within GFF440at 480.476 kb on - strand, within GFF440at 480.476 kb on - strand, within GFF440at 480.476 kb on - strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.650 kb on - strand, within GFF440at 480.650 kb on - strand, within GFF440at 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.872 kb on - strandat 480.872 kb on - strandat 480.872 kb on - strandat 480.872 kb on - strandat 480.872 kb on - strandat 481.233 kb on + strand, within GFF441at 481.233 kb on + strand, within GFF441at 481.233 kb on + strand, within GFF441at 481.233 kb on + strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.922 kb on + strand, within GFF442at 481.922 kb on + strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 482.146 kb on + strand, within GFF443at 482.147 kb on - strand, within GFF443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
476,323 + GFF439 0.14 -0.2
476,323 + GFF439 0.14 +0.1
476,323 + GFF439 0.14 -0.9
476,324 - GFF439 0.14 -0.1
476,324 - GFF439 0.14 +0.6
476,561 - GFF439 0.39 -1.0
476,596 + GFF439 0.42 -0.8
476,597 - GFF439 0.42 +0.1
476,799 + GFF439 0.63 -0.0
476,800 - GFF439 0.63 +0.2
476,800 - GFF439 0.63 +0.6
477,034 + GFF439 0.87 -1.1
477,034 + GFF439 0.87 +0.1
477,034 + GFF439 0.87 -0.2
477,034 + GFF439 0.87 -0.3
477,034 + GFF439 0.87 +1.3
477,034 + GFF439 0.87 -0.6
477,034 + GFF439 0.87 -0.8
477,035 - GFF439 0.87 -0.3
477,035 - GFF439 0.87 +0.2
477,035 - GFF439 0.87 +0.5
477,035 - GFF439 0.87 +0.4
477,035 - GFF439 0.87 +0.4
477,035 - GFF439 0.87 -0.5
477,035 - GFF439 0.87 -0.0
477,035 - GFF439 0.87 -0.6
477,064 + -0.4
477,065 - -1.3
477,065 - +0.2
477,136 + -0.5
477,136 + +0.8
477,137 - -0.7
477,137 - +0.5
477,302 + +0.1
477,520 + -0.9
477,520 + +0.0
477,520 + -0.1
477,520 + -1.3
477,520 + -0.0
477,520 + -0.4
477,521 - -0.2
477,521 - +2.3
477,565 + -0.8
477,565 + -1.0
477,566 - -0.3
477,566 - -0.5
477,566 - -0.5
477,566 - -0.2
477,658 + GFF440 0.12 +0.3
477,658 + GFF440 0.12 +0.6
477,658 + GFF440 0.12 -0.8
477,658 + GFF440 0.12 -1.0
477,658 + GFF440 0.12 -0.7
477,658 + GFF440 0.12 -1.5
477,658 + GFF440 0.12 +0.4
477,659 - GFF440 0.12 +0.1
477,659 - GFF440 0.12 -0.5
477,659 - GFF440 0.12 -0.1
477,659 - GFF440 0.12 -0.3
477,659 - GFF440 0.12 +0.1
477,659 - GFF440 0.12 +0.1
477,673 + GFF440 0.12 -0.0
477,673 + GFF440 0.12 +0.2
477,673 + GFF440 0.12 +0.1
477,673 + GFF440 0.12 +0.2
477,673 + GFF440 0.12 -1.4
477,673 + GFF440 0.12 -0.7
477,673 + GFF440 0.12 -0.7
477,673 + GFF440 0.12 -0.0
477,673 + GFF440 0.12 +0.5
477,673 + GFF440 0.12 +0.4
477,673 + GFF440 0.12 +0.5
477,673 + GFF440 0.12 +0.2
477,673 + GFF440 0.12 -0.3
477,673 + GFF440 0.12 -0.4
477,674 - GFF440 0.12 -1.1
477,674 - GFF440 0.12 -0.1
477,674 - GFF440 0.12 -0.9
477,674 - GFF440 0.12 -0.5
477,674 - GFF440 0.12 -0.5
477,674 - GFF440 0.12 -0.4
477,674 - GFF440 0.12 -0.5
477,674 - GFF440 0.12 -0.2
477,674 - GFF440 0.12 +1.3
477,674 - GFF440 0.12 +0.6
477,674 - GFF440 0.12 -0.3
477,674 - GFF440 0.12 +0.1
477,782 - GFF440 0.15 -1.0
477,823 + GFF440 0.16 +0.1
477,904 + GFF440 0.18 +0.1
477,904 + GFF440 0.18 -1.7
477,905 - GFF440 0.18 -0.3
477,905 - GFF440 0.18 +0.3
477,961 + GFF440 0.19 +0.5
477,994 + GFF440 0.20 +0.3
478,091 - GFF440 0.23 -0.4
478,091 - GFF440 0.23 -0.8
478,114 + GFF440 0.23 -1.3
478,114 + GFF440 0.23 +1.0
478,114 + GFF440 0.23 +0.5
478,115 - GFF440 0.23 +0.7
478,115 - GFF440 0.23 +0.1
478,165 - GFF440 0.24 +0.4
478,204 + GFF440 0.25 +0.0
478,205 - GFF440 0.25 -0.4
478,205 - GFF440 0.25 +1.1
478,205 - GFF440 0.25 -0.1
478,702 + GFF440 0.38 -0.8
478,703 - GFF440 0.38 +0.8
478,756 + GFF440 0.39 -0.0
478,756 + GFF440 0.39 -1.0
478,757 - GFF440 0.39 +0.2
478,757 - GFF440 0.39 +0.1
478,757 - GFF440 0.39 -0.2
478,757 - GFF440 0.39 -0.1
478,771 + GFF440 0.40 -0.9
478,771 + GFF440 0.40 +0.3
478,772 - GFF440 0.40 -0.3
479,128 + GFF440 0.48 +0.7
479,129 - GFF440 0.48 -0.4
479,129 - GFF440 0.48 +0.0
479,129 - GFF440 0.48 +0.2
479,203 + GFF440 0.50 -0.7
479,203 + GFF440 0.50 +0.7
479,203 + GFF440 0.50 -1.0
479,203 + GFF440 0.50 +0.6
479,203 + GFF440 0.50 -0.6
479,204 - GFF440 0.50 -0.3
479,204 - GFF440 0.50 +0.2
479,416 + GFF440 0.56 +0.1
479,416 + GFF440 0.56 +0.9
479,416 + GFF440 0.56 -0.3
479,416 + GFF440 0.56 -0.2
479,416 + GFF440 0.56 +0.3
479,416 + GFF440 0.56 -0.3
479,416 + GFF440 0.56 -0.5
479,417 - GFF440 0.56 +1.5
479,417 - GFF440 0.56 +0.5
479,417 - GFF440 0.56 -0.9
479,422 + GFF440 0.56 -0.6
479,566 + GFF440 0.59 +0.3
479,566 + GFF440 0.59 -0.4
479,566 + GFF440 0.59 -0.4
479,566 + GFF440 0.59 +1.0
479,566 + GFF440 0.59 -0.2
479,567 - GFF440 0.59 +0.8
479,567 - GFF440 0.59 +0.9
479,567 - GFF440 0.59 -0.2
479,567 - GFF440 0.59 +0.8
479,567 - GFF440 0.59 -0.3
479,611 + GFF440 0.60 -0.3
479,611 + GFF440 0.60 -0.3
479,611 + GFF440 0.60 +0.2
479,612 - GFF440 0.61 +0.0
479,612 - GFF440 0.61 -0.9
479,612 - GFF440 0.61 -0.2
479,767 + GFF440 0.64 -0.7
479,767 + GFF440 0.64 +0.3
479,896 + GFF440 0.68 -0.2
479,896 + GFF440 0.68 +0.3
479,899 + GFF440 0.68 -0.2
479,899 + GFF440 0.68 -0.6
479,899 + GFF440 0.68 +0.1
479,899 + GFF440 0.68 +0.4
479,899 + GFF440 0.68 -0.1
479,900 - GFF440 0.68 -1.0
479,900 - GFF440 0.68 -0.3
479,963 - GFF440 0.69 -1.0
480,052 + GFF440 0.71 +0.5
480,052 + GFF440 0.71 +1.1
480,052 + GFF440 0.71 -0.3
480,053 - GFF440 0.71 -0.6
480,058 + GFF440 0.72 -0.7
480,058 + GFF440 0.72 -0.0
480,058 + GFF440 0.72 +1.5
480,058 + GFF440 0.72 -1.3
480,058 + GFF440 0.72 -1.0
480,059 - GFF440 0.72 +2.3
480,059 - GFF440 0.72 -0.4
480,059 - GFF440 0.72 -0.9
480,059 - GFF440 0.72 +0.3
480,059 - GFF440 0.72 +0.5
480,059 - GFF440 0.72 +0.1
480,235 + GFF440 0.76 +0.6
480,235 + GFF440 0.76 +0.1
480,235 + GFF440 0.76 -0.6
480,235 + GFF440 0.76 -1.0
480,235 + GFF440 0.76 -1.1
480,236 - GFF440 0.76 +0.1
480,236 - GFF440 0.76 +0.3
480,236 - GFF440 0.76 -2.2
480,236 - GFF440 0.76 +0.0
480,238 + GFF440 0.76 -0.3
480,238 + GFF440 0.76 -1.0
480,238 + GFF440 0.76 -0.1
480,239 - GFF440 0.76 -0.2
480,239 - GFF440 0.76 +0.5
480,239 - GFF440 0.76 -0.2
480,239 - GFF440 0.76 -1.0
480,239 - GFF440 0.76 -0.5
480,239 - GFF440 0.76 -0.8
480,239 - GFF440 0.76 -0.2
480,466 + GFF440 0.82 -0.9
480,467 - GFF440 0.82 +0.5
480,476 - GFF440 0.82 +1.0
480,476 - GFF440 0.82 +0.3
480,476 - GFF440 0.82 +0.9
480,649 + GFF440 0.86 -0.3
480,649 + GFF440 0.86 -1.1
480,649 + GFF440 0.86 -0.0
480,649 + GFF440 0.86 -0.5
480,649 + GFF440 0.86 +0.4
480,650 - GFF440 0.86 +0.1
480,650 - GFF440 0.86 -0.3
480,871 + -0.4
480,871 + +0.0
480,871 + -0.2
480,871 + -0.7
480,871 + -0.8
480,871 + +0.0
480,872 - +0.3
480,872 - -0.1
480,872 - -0.2
480,872 - -0.5
480,872 - +0.1
481,233 + GFF441 0.11 -0.6
481,233 + GFF441 0.11 -1.1
481,233 + GFF441 0.11 +0.7
481,233 + GFF441 0.11 -1.2
481,234 - GFF441 0.12 +0.5
481,234 - GFF441 0.12 +0.7
481,234 - GFF441 0.12 +0.8
481,234 - GFF441 0.12 +1.0
481,234 - GFF441 0.12 +0.9
481,613 + GFF442 0.15 -0.1
481,613 + GFF442 0.15 +0.0
481,613 + GFF442 0.15 +1.9
481,613 + GFF442 0.15 +1.8
481,613 + GFF442 0.15 -0.5
481,614 - GFF442 0.15 -0.3
481,614 - GFF442 0.15 -0.4
481,614 - GFF442 0.15 -0.6
481,614 - GFF442 0.15 -0.3
481,895 + GFF442 0.74 -0.1
481,895 + GFF442 0.74 -0.1
481,895 + GFF442 0.74 +0.8
481,895 + GFF442 0.74 -0.8
481,895 + GFF442 0.74 +0.1
481,895 + GFF442 0.74 +0.1
481,896 - GFF442 0.74 -1.2
481,896 - GFF442 0.74 -0.5
481,896 - GFF442 0.74 -0.4
481,896 - GFF442 0.74 +0.3
481,922 + GFF442 0.80 -0.2
481,922 + GFF442 0.80 -0.0
481,923 - GFF442 0.80 +0.3
481,923 - GFF442 0.80 -0.7
481,923 - GFF442 0.80 -0.5
481,923 - GFF442 0.80 -0.5
481,923 - GFF442 0.80 -1.6
481,923 - GFF442 0.80 -1.0
481,923 - GFF442 0.80 -1.3
481,923 - GFF442 0.80 +0.3
482,146 + GFF443 0.19 -0.5
482,147 - GFF443 0.19 -0.5

Or see this region's nucleotide sequence