Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4389 and GFF4390 are separated by 457 nucleotides GFF4390 and GFF4391 overlap by 4 nucleotides
GFF4389 - Type IV secretory pathway, VirD2 components (relaxase), at 17,132 to 19,126
GFF4389
GFF4390 - Membrane-fusion protein, at 19,584 to 20,471
GFF4390
GFF4391 - Acriflavin resistance protein, at 20,468 to 23,791
GFF4391
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.594 kb on - strand, within GFF4389 at 18.594 kb on - strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.944 kb on + strand at 18.944 kb on + strand at 18.944 kb on + strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.977 kb on + strand at 18.978 kb on - strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.158 kb on + strand at 19.158 kb on + strand at 19.159 kb on - strand at 19.235 kb on + strand at 19.236 kb on - strand at 19.236 kb on - strand at 19.236 kb on - strand at 19.236 kb on - strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.427 kb on + strand at 19.427 kb on + strand at 19.427 kb on + strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.516 kb on + strand at 19.516 kb on + strand at 19.517 kb on - strand at 19.538 kb on + strand at 19.538 kb on + strand at 19.539 kb on - strand at 19.539 kb on - strand at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 20.160 kb on + strand, within GFF4390 at 20.160 kb on + strand, within GFF4390 at 20.230 kb on + strand, within GFF4390 at 20.230 kb on + strand, within GFF4390 at 20.231 kb on - strand, within GFF4390 at 20.231 kb on - strand, within GFF4390 at 20.231 kb on - strand, within GFF4390 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.817 kb on - strand, within GFF4391 at 20.817 kb on - strand, within GFF4391 at 20.817 kb on - strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.943 kb on - strand, within GFF4391 at 20.943 kb on - strand, within GFF4391 at 20.994 kb on - strand, within GFF4391 at 21.074 kb on + strand, within GFF4391 at 21.074 kb on + strand, within GFF4391 at 21.074 kb on + strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.188 kb on + strand, within GFF4391 at 21.188 kb on + strand, within GFF4391 at 21.188 kb on + strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.248 kb on + strand, within GFF4391 at 21.249 kb on - strand, within GFF4391 at 21.249 kb on - strand, within GFF4391
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,593 + GFF4389 0.73 +0.3 18,593 + GFF4389 0.73 +0.7 18,593 + GFF4389 0.73 +0.1 18,593 + GFF4389 0.73 +1.0 18,593 + GFF4389 0.73 -0.2 18,593 + GFF4389 0.73 -0.0 18,593 + GFF4389 0.73 +0.8 18,594 - GFF4389 0.73 -0.3 18,594 - GFF4389 0.73 +1.1 18,819 + GFF4389 0.85 -1.3 18,819 + GFF4389 0.85 +1.3 18,819 + GFF4389 0.85 +0.2 18,819 + GFF4389 0.85 -0.9 18,819 + GFF4389 0.85 -1.0 18,819 + GFF4389 0.85 -0.8 18,819 + GFF4389 0.85 -0.3 18,882 + GFF4389 0.88 -0.1 18,882 + GFF4389 0.88 -0.1 18,882 + GFF4389 0.88 -0.0 18,882 + GFF4389 0.88 -1.3 18,882 + GFF4389 0.88 -1.1 18,882 + GFF4389 0.88 -0.5 18,882 + GFF4389 0.88 +1.1 18,882 + GFF4389 0.88 -0.7 18,883 - GFF4389 0.88 -0.4 18,883 - GFF4389 0.88 +0.4 18,883 - GFF4389 0.88 +0.2 18,883 - GFF4389 0.88 +0.6 18,883 - GFF4389 0.88 -0.5 18,944 + -0.3 18,944 + -1.4 18,944 + -0.3 18,945 - +0.1 18,945 - -0.4 18,945 - -0.5 18,945 - +1.1 18,945 - -0.2 18,945 - -0.1 18,977 + -0.6 18,978 - -0.7 19,103 - +1.5 19,103 - -1.1 19,103 - +0.2 19,103 - -0.1 19,158 + +0.2 19,158 + -0.3 19,159 - -1.1 19,235 + +0.4 19,236 - -0.6 19,236 - +0.4 19,236 - -1.8 19,236 - -0.6 19,325 + -0.1 19,325 + +0.1 19,325 + -0.1 19,325 + -1.6 19,325 + -1.1 19,325 + -0.8 19,325 + -0.9 19,325 + -0.2 19,325 + -0.3 19,325 + -0.3 19,325 + -0.3 19,325 + +0.3 19,325 + -0.8 19,325 + +0.1 19,325 + -0.1 19,325 + -0.2 19,325 + -0.3 19,325 + -0.1 19,325 + -1.0 19,325 + +0.3 19,325 + -0.2 19,326 - +0.3 19,326 - -0.6 19,326 - -0.2 19,326 - -1.7 19,326 - -0.3 19,326 - +1.7 19,326 - -0.4 19,326 - -0.9 19,326 - -0.9 19,326 - -0.7 19,326 - -0.3 19,326 - -1.5 19,326 - -0.9 19,326 - -2.0 19,326 - -0.4 19,326 - +0.6 19,326 - -1.7 19,326 - +0.1 19,329 + +0.7 19,329 + +0.5 19,329 + +0.1 19,329 + -0.3 19,329 + +3.3 19,329 + -0.2 19,329 + +0.2 19,329 + -0.8 19,329 + -0.0 19,329 + -0.6 19,329 + +0.7 19,329 + -0.7 19,330 - -0.3 19,330 - -0.1 19,330 - -0.6 19,330 - -0.1 19,330 - -0.2 19,330 - -0.6 19,330 - -0.3 19,330 - +0.1 19,330 - -0.9 19,330 - -0.3 19,330 - +0.2 19,330 - +0.7 19,330 - +1.7 19,330 - -0.4 19,330 - -0.4 19,427 + -0.9 19,427 + -0.1 19,427 + +0.4 19,428 - -0.6 19,428 - -0.2 19,428 - -0.2 19,428 - -1.9 19,428 - +0.3 19,428 - +0.5 19,435 + +0.1 19,435 + +0.1 19,435 + +0.2 19,435 + +0.3 19,435 + -1.1 19,436 - +0.5 19,436 - +0.4 19,436 - -0.9 19,436 - +0.5 19,436 - +0.5 19,436 - -0.8 19,436 - -0.1 19,436 - -0.6 19,436 - +0.8 19,436 - -1.5 19,436 - -0.5 19,436 - +2.4 19,436 - +0.2 19,436 - -0.1 19,436 - -0.3 19,436 - -0.2 19,516 + -0.4 19,516 + +1.1 19,517 - -1.7 19,538 + +1.5 19,538 + +0.7 19,539 - +0.7 19,539 - +0.7 19,899 + GFF4390 0.35 -1.1 19,899 + GFF4390 0.35 +1.0 19,899 + GFF4390 0.35 +0.0 19,899 + GFF4390 0.35 +0.5 19,899 + GFF4390 0.35 -1.1 19,899 + GFF4390 0.35 -0.1 19,899 + GFF4390 0.35 +0.7 19,899 + GFF4390 0.35 +1.7 19,899 + GFF4390 0.35 -0.4 19,899 + GFF4390 0.35 +0.3 19,899 + GFF4390 0.35 -0.6 19,899 + GFF4390 0.35 -0.0 19,899 + GFF4390 0.35 +0.3 19,899 + GFF4390 0.35 +0.4 19,899 + GFF4390 0.35 +1.5 19,899 + GFF4390 0.35 +0.3 19,899 + GFF4390 0.35 +1.3 19,900 - GFF4390 0.36 +0.1 19,900 - GFF4390 0.36 -0.2 19,900 - GFF4390 0.36 +0.9 19,900 - GFF4390 0.36 +0.9 19,900 - GFF4390 0.36 -1.1 19,900 - GFF4390 0.36 +0.2 19,900 - GFF4390 0.36 +1.1 19,900 - GFF4390 0.36 -0.3 19,900 - GFF4390 0.36 -0.2 19,900 - GFF4390 0.36 -0.6 19,900 - GFF4390 0.36 -0.9 19,900 - GFF4390 0.36 -0.1 19,900 - GFF4390 0.36 -0.5 19,900 - GFF4390 0.36 -0.4 19,900 - GFF4390 0.36 -0.2 19,900 - GFF4390 0.36 -0.3 19,900 - GFF4390 0.36 -0.1 19,900 - GFF4390 0.36 +0.4 20,160 + GFF4390 0.65 +0.3 20,160 + GFF4390 0.65 -0.2 20,230 + GFF4390 0.73 -1.5 20,230 + GFF4390 0.73 -0.2 20,231 - GFF4390 0.73 -0.1 20,231 - GFF4390 0.73 +0.9 20,231 - GFF4390 0.73 +0.1 20,816 + GFF4391 0.10 -0.8 20,816 + GFF4391 0.10 -0.5 20,816 + GFF4391 0.10 +0.4 20,816 + GFF4391 0.10 -0.1 20,816 + GFF4391 0.10 -0.6 20,817 - GFF4391 0.10 +0.5 20,817 - GFF4391 0.10 -0.4 20,817 - GFF4391 0.10 +0.2 20,933 + GFF4391 0.14 -0.6 20,933 + GFF4391 0.14 -0.2 20,933 + GFF4391 0.14 -0.7 20,933 + GFF4391 0.14 +1.3 20,933 + GFF4391 0.14 -0.3 20,934 - GFF4391 0.14 -0.0 20,934 - GFF4391 0.14 -0.4 20,934 - GFF4391 0.14 -0.6 20,934 - GFF4391 0.14 +0.3 20,942 + GFF4391 0.14 -1.0 20,942 + GFF4391 0.14 +0.4 20,942 + GFF4391 0.14 +0.1 20,942 + GFF4391 0.14 -0.5 20,942 + GFF4391 0.14 +0.4 20,942 + GFF4391 0.14 +0.1 20,942 + GFF4391 0.14 -0.1 20,942 + GFF4391 0.14 -0.0 20,942 + GFF4391 0.14 -0.7 20,942 + GFF4391 0.14 +0.2 20,943 - GFF4391 0.14 +0.4 20,943 - GFF4391 0.14 +1.0 20,994 - GFF4391 0.16 +1.3 21,074 + GFF4391 0.18 -0.6 21,074 + GFF4391 0.18 -0.0 21,074 + GFF4391 0.18 -0.3 21,075 - GFF4391 0.18 +0.1 21,075 - GFF4391 0.18 -0.2 21,075 - GFF4391 0.18 -0.3 21,075 - GFF4391 0.18 +0.8 21,147 + GFF4391 0.20 +0.5 21,147 + GFF4391 0.20 -0.0 21,147 + GFF4391 0.20 -0.2 21,147 + GFF4391 0.20 -0.1 21,147 + GFF4391 0.20 -0.1 21,147 + GFF4391 0.20 -0.4 21,147 + GFF4391 0.20 -0.9 21,147 + GFF4391 0.20 -1.3 21,147 + GFF4391 0.20 -0.3 21,147 + GFF4391 0.20 -0.6 21,147 + GFF4391 0.20 +0.2 21,147 + GFF4391 0.20 -0.1 21,148 - GFF4391 0.20 -0.3 21,148 - GFF4391 0.20 -0.3 21,148 - GFF4391 0.20 -0.7 21,148 - GFF4391 0.20 +0.9 21,148 - GFF4391 0.20 -0.2 21,148 - GFF4391 0.20 +0.1 21,162 + GFF4391 0.21 -0.7 21,162 + GFF4391 0.21 -0.9 21,162 + GFF4391 0.21 +0.2 21,162 + GFF4391 0.21 +0.1 21,162 + GFF4391 0.21 -0.3 21,162 + GFF4391 0.21 +0.7 21,162 + GFF4391 0.21 +0.4 21,162 + GFF4391 0.21 -1.1 21,162 + GFF4391 0.21 +0.0 21,162 + GFF4391 0.21 -0.4 21,162 + GFF4391 0.21 -0.3 21,163 - GFF4391 0.21 -0.3 21,163 - GFF4391 0.21 -0.4 21,163 - GFF4391 0.21 -0.3 21,163 - GFF4391 0.21 -0.4 21,163 - GFF4391 0.21 -0.2 21,163 - GFF4391 0.21 -0.0 21,163 - GFF4391 0.21 +0.0 21,163 - GFF4391 0.21 -0.9 21,163 - GFF4391 0.21 -0.2 21,163 - GFF4391 0.21 -0.8 21,188 + GFF4391 0.22 -0.3 21,188 + GFF4391 0.22 +0.1 21,188 + GFF4391 0.22 -0.7 21,189 - GFF4391 0.22 +0.5 21,189 - GFF4391 0.22 -0.9 21,189 - GFF4391 0.22 +0.3 21,189 - GFF4391 0.22 +0.7 21,189 - GFF4391 0.22 -0.3 21,189 - GFF4391 0.22 -0.6 21,248 + GFF4391 0.23 +0.3 21,249 - GFF4391 0.23 -0.4 21,249 - GFF4391 0.23 -1.0
Or see this region's nucleotide sequence