Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4355 and GFF4356 are separated by 162 nucleotides GFF4356 and GFF4357 overlap by 4 nucleotides GFF4357 and GFF4358 are separated by 49 nucleotides
GFF4355 - Alcohol dehydrogenase (EC 1.1.1.1), at 278,086 to 279,123
GFF4355
GFF4356 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 279,286 to 280,458
GFF4356
GFF4357 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 280,455 to 281,240
GFF4357
GFF4358 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 281,290 to 282,078
GFF4358
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1 at 278.465 kb on + strand, within GFF4355 at 278.747 kb on + strand, within GFF4355 at 278.855 kb on + strand, within GFF4355 at 278.881 kb on + strand, within GFF4355 at 278.882 kb on - strand, within GFF4355 at 278.882 kb on - strand, within GFF4355 at 278.993 kb on + strand, within GFF4355 at 278.994 kb on - strand, within GFF4355 at 279.138 kb on - strand at 279.694 kb on + strand, within GFF4356 at 279.694 kb on + strand, within GFF4356 at 279.793 kb on + strand, within GFF4356 at 279.794 kb on - strand, within GFF4356 at 279.985 kb on + strand, within GFF4356 at 279.985 kb on + strand, within GFF4356 at 279.985 kb on + strand, within GFF4356 at 280.006 kb on + strand, within GFF4356 at 280.007 kb on - strand, within GFF4356 at 280.007 kb on - strand, within GFF4356 at 280.061 kb on + strand, within GFF4356 at 280.370 kb on + strand at 280.660 kb on - strand, within GFF4357
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 278,465 + GFF4355 0.37 -0.6 278,747 + GFF4355 0.64 -0.4 278,855 + GFF4355 0.74 +0.1 278,881 + GFF4355 0.77 +0.1 278,882 - GFF4355 0.77 -0.1 278,882 - GFF4355 0.77 -0.5 278,993 + GFF4355 0.87 +0.4 278,994 - GFF4355 0.87 +1.2 279,138 - -1.2 279,694 + GFF4356 0.35 -1.5 279,694 + GFF4356 0.35 -1.4 279,793 + GFF4356 0.43 -0.8 279,794 - GFF4356 0.43 -2.1 279,985 + GFF4356 0.60 -1.8 279,985 + GFF4356 0.60 -1.3 279,985 + GFF4356 0.60 -0.4 280,006 + GFF4356 0.61 -1.0 280,007 - GFF4356 0.61 +0.2 280,007 - GFF4356 0.61 -0.4 280,061 + GFF4356 0.66 +0.1 280,370 + +0.6 280,660 - GFF4357 0.26 -0.0
Or see this region's nucleotide sequence