Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4296 and GFF4297 are separated by 22 nucleotides GFF4297 and GFF4298 are separated by 42 nucleotides GFF4298 and GFF4299 are separated by 58 nucleotides
GFF4296 - hypothetical protein, at 214,772 to 216,310
GFF4296
GFF4297 - 2-ketocyclohexanecarboxyl-CoA hydrolase, at 216,333 to 217,127
GFF4297
GFF4298 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase, at 217,170 to 217,946
GFF4298
GFF4299 - 3-ketoacyl-CoA thiolase, at 218,005 to 219,210
GFF4299
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1 at 215.547 kb on + strand, within GFF4296 at 215.673 kb on + strand, within GFF4296 at 216.017 kb on + strand, within GFF4296 at 216.409 kb on + strand at 216.409 kb on + strand at 216.409 kb on + strand at 216.412 kb on + strand at 216.412 kb on + strand at 216.413 kb on - strand, within GFF4297 at 216.571 kb on - strand, within GFF4297 at 216.613 kb on + strand, within GFF4297 at 216.613 kb on + strand, within GFF4297 at 216.614 kb on - strand, within GFF4297 at 216.890 kb on - strand, within GFF4297 at 217.049 kb on - strand at 217.115 kb on - strand at 217.474 kb on + strand, within GFF4298
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 215,547 + GFF4296 0.50 -0.1 215,673 + GFF4296 0.59 +0.4 216,017 + GFF4296 0.81 -0.0 216,409 + +0.1 216,409 + -2.6 216,409 + +0.2 216,412 + -0.7 216,412 + +0.1 216,413 - GFF4297 0.10 -0.7 216,571 - GFF4297 0.30 +0.1 216,613 + GFF4297 0.35 -0.7 216,613 + GFF4297 0.35 -0.5 216,614 - GFF4297 0.35 -0.7 216,890 - GFF4297 0.70 -0.6 217,049 - -0.3 217,115 - -0.5 217,474 + GFF4298 0.39 -0.5
Or see this region's nucleotide sequence