Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF425 and GFF426 overlap by 4 nucleotides GFF426 and GFF427 are separated by 122 nucleotides GFF427 and GFF428 are separated by 77 nucleotides
GFF425 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 460,610 to 461,659
GFF425
GFF426 - Cobyric acid synthase (EC 6.3.5.10), at 461,656 to 463,146
GFF426
GFF427 - no description, at 463,269 to 463,499
GFF427
GFF428 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 463,577 to 465,073
GFF428
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.915 kb on + strand, within GFF426 at 462.324 kb on - strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.570 kb on - strand, within GFF426 at 462.570 kb on - strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 463.013 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.295 kb on - strand, within GFF427 at 463.295 kb on - strand, within GFF427 at 463.381 kb on - strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.390 kb on - strand, within GFF427 at 463.390 kb on - strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.765 kb on - strand, within GFF428 at 463.765 kb on - strand, within GFF428 at 463.914 kb on + strand, within GFF428 at 463.914 kb on + strand, within GFF428 at 463.915 kb on - strand, within GFF428 at 463.915 kb on - strand, within GFF428 at 464.064 kb on + strand, within GFF428
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 461,799 + +0.0 461,799 + -0.0 461,799 + -0.5 461,799 + -0.3 461,799 + -0.5 461,799 + -0.7 461,799 + -0.2 461,799 + +0.1 461,799 + -2.2 461,800 - -0.8 461,800 - -0.2 461,800 - +0.4 461,800 - +2.9 461,800 - +1.3 461,800 - -0.5 461,800 - +0.1 461,800 - -0.2 461,800 - +0.4 461,800 - +0.1 461,801 + -0.0 461,801 + -0.2 461,801 + -0.5 461,801 + +0.7 461,801 + +0.7 461,801 + -0.7 461,801 + -0.7 461,801 + -0.0 461,801 + -1.0 461,801 + -0.6 461,801 + +0.2 461,801 + -0.4 461,801 + +1.9 461,801 + -0.2 461,801 + -0.9 461,801 + +0.5 461,801 + -0.4 461,801 + -0.1 461,801 + -0.1 461,801 + +1.3 461,801 + +0.3 461,801 + +0.1 461,801 + +1.3 461,802 - -0.2 461,802 - -0.5 461,802 - -0.6 461,802 - +0.2 461,802 - -0.6 461,802 - -2.0 461,802 - -0.2 461,802 - +1.3 461,802 - -0.2 461,802 - +0.0 461,802 - +0.5 461,802 - -0.4 461,802 - -0.5 461,802 - +2.3 461,802 - +0.4 461,802 - -0.4 461,802 - -0.9 461,802 - -0.1 461,802 - -0.9 461,802 - +1.3 461,802 - -0.1 461,802 - -0.6 461,802 - +0.9 461,802 - -0.1 461,802 - -0.4 461,802 - -0.7 461,805 + GFF426 0.10 +0.9 461,805 + GFF426 0.10 -0.7 461,805 + GFF426 0.10 -1.5 461,805 + GFF426 0.10 -0.5 461,805 + GFF426 0.10 -0.6 461,805 + GFF426 0.10 +0.6 461,806 - GFF426 0.10 -0.6 461,806 - GFF426 0.10 -0.6 461,806 - GFF426 0.10 -2.9 461,806 - GFF426 0.10 -0.8 461,806 - GFF426 0.10 +0.0 461,915 + GFF426 0.17 -1.3 462,324 - GFF426 0.45 -1.2 462,569 + GFF426 0.61 +0.1 462,569 + GFF426 0.61 +0.8 462,569 + GFF426 0.61 -1.3 462,570 - GFF426 0.61 -0.2 462,570 - GFF426 0.61 -1.3 462,917 + GFF426 0.85 -0.7 462,917 + GFF426 0.85 -1.4 462,917 + GFF426 0.85 -2.5 462,918 - GFF426 0.85 -0.3 462,918 - GFF426 0.85 +0.9 462,918 - GFF426 0.85 -0.4 462,918 - GFF426 0.85 -0.0 463,013 + -0.5 463,231 + -0.5 463,231 + +0.3 463,231 + -0.3 463,231 + +0.9 463,232 - -0.8 463,232 - +0.6 463,232 - +0.0 463,232 - +0.9 463,232 - +0.3 463,232 - -0.0 463,294 + GFF427 0.11 -0.0 463,294 + GFF427 0.11 +0.9 463,294 + GFF427 0.11 -0.8 463,294 + GFF427 0.11 -0.1 463,294 + GFF427 0.11 -1.7 463,294 + GFF427 0.11 -0.3 463,294 + GFF427 0.11 -0.1 463,295 - GFF427 0.11 +0.3 463,295 - GFF427 0.11 +0.0 463,381 - GFF427 0.48 -0.1 463,389 + GFF427 0.52 +0.0 463,389 + GFF427 0.52 +0.7 463,389 + GFF427 0.52 -0.9 463,389 + GFF427 0.52 -0.0 463,390 - GFF427 0.52 -0.9 463,390 - GFF427 0.52 -0.3 463,419 + GFF427 0.65 -0.3 463,419 + GFF427 0.65 -0.0 463,419 + GFF427 0.65 -0.6 463,420 - GFF427 0.65 +0.0 463,420 - GFF427 0.65 +0.5 463,420 - GFF427 0.65 -0.6 463,680 + +0.1 463,680 + -0.9 463,680 + -0.8 463,680 + +0.2 463,680 + -0.3 463,681 - +1.3 463,681 - -1.1 463,681 - +0.3 463,681 - -0.4 463,764 + GFF428 0.12 -0.1 463,764 + GFF428 0.12 -0.6 463,764 + GFF428 0.12 +0.3 463,764 + GFF428 0.12 -0.1 463,764 + GFF428 0.12 -0.0 463,764 + GFF428 0.12 -0.5 463,765 - GFF428 0.13 -0.4 463,765 - GFF428 0.13 +0.5 463,914 + GFF428 0.23 +0.3 463,914 + GFF428 0.23 +0.2 463,915 - GFF428 0.23 -0.3 463,915 - GFF428 0.23 -1.0 464,064 + GFF428 0.33 -0.5
Or see this region's nucleotide sequence