Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4238 and GFF4239 are separated by 110 nucleotides GFF4239 and GFF4240 are separated by 188 nucleotides
GFF4238 - no description, at 148,744 to 149,880
GFF4238
GFF4239 - Mll5186 protein, at 149,991 to 150,965
GFF4239
GFF4240 - Integral membrane protein, at 151,154 to 152,875
GFF4240
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 149.183 kb on - strand, within GFF4238 at 149.254 kb on + strand, within GFF4238 at 149.254 kb on + strand, within GFF4238 at 149.254 kb on + strand, within GFF4238 at 149.254 kb on + strand, within GFF4238 at 149.254 kb on + strand, within GFF4238 at 149.254 kb on + strand, within GFF4238 at 149.255 kb on - strand, within GFF4238 at 149.255 kb on - strand, within GFF4238 at 149.255 kb on - strand, within GFF4238 at 149.275 kb on + strand, within GFF4238 at 149.276 kb on - strand, within GFF4238 at 149.276 kb on - strand, within GFF4238 at 149.414 kb on - strand, within GFF4238 at 149.414 kb on - strand, within GFF4238 at 149.534 kb on - strand, within GFF4238 at 149.743 kb on + strand, within GFF4238 at 149.744 kb on - strand, within GFF4238 at 149.744 kb on - strand, within GFF4238 at 149.744 kb on - strand, within GFF4238 at 149.744 kb on - strand, within GFF4238 at 149.744 kb on - strand, within GFF4238 at 149.744 kb on - strand, within GFF4238 at 149.842 kb on + strand at 149.843 kb on - strand at 149.843 kb on - strand at 149.963 kb on + strand at 149.964 kb on - strand at 149.967 kb on + strand at 149.967 kb on + strand at 149.968 kb on - strand at 149.973 kb on + strand at 149.974 kb on - strand at 149.974 kb on - strand at 150.083 kb on - strand at 150.083 kb on - strand at 150.083 kb on - strand at 150.163 kb on + strand, within GFF4239 at 150.163 kb on + strand, within GFF4239 at 150.163 kb on + strand, within GFF4239 at 150.163 kb on + strand, within GFF4239 at 150.163 kb on + strand, within GFF4239 at 150.164 kb on - strand, within GFF4239 at 150.164 kb on - strand, within GFF4239 at 150.164 kb on - strand, within GFF4239 at 150.164 kb on - strand, within GFF4239 at 150.164 kb on - strand, within GFF4239 at 150.430 kb on + strand, within GFF4239 at 150.430 kb on + strand, within GFF4239 at 150.430 kb on + strand, within GFF4239 at 150.430 kb on + strand, within GFF4239 at 150.431 kb on - strand, within GFF4239 at 150.431 kb on - strand, within GFF4239 at 150.431 kb on - strand, within GFF4239 at 150.650 kb on - strand, within GFF4239 at 150.650 kb on - strand, within GFF4239 at 150.944 kb on + strand at 150.944 kb on + strand at 150.945 kb on - strand at 150.955 kb on + strand at 150.955 kb on + strand at 150.955 kb on + strand at 150.956 kb on - strand at 150.980 kb on + strand at 150.980 kb on + strand at 150.980 kb on + strand at 150.981 kb on - strand at 150.981 kb on - strand at 150.981 kb on - strand at 151.372 kb on - strand, within GFF4240 at 151.486 kb on - strand, within GFF4240 at 151.530 kb on + strand, within GFF4240 at 151.531 kb on - strand, within GFF4240 at 151.675 kb on - strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.933 kb on - strand, within GFF4240 at 151.933 kb on - strand, within GFF4240
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 149,183 - GFF4238 0.39 -0.9 149,254 + GFF4238 0.45 -0.9 149,254 + GFF4238 0.45 -0.2 149,254 + GFF4238 0.45 +0.6 149,254 + GFF4238 0.45 -0.2 149,254 + GFF4238 0.45 -0.4 149,254 + GFF4238 0.45 -1.4 149,255 - GFF4238 0.45 -0.6 149,255 - GFF4238 0.45 +0.3 149,255 - GFF4238 0.45 +0.1 149,275 + GFF4238 0.47 -1.1 149,276 - GFF4238 0.47 +0.2 149,276 - GFF4238 0.47 -0.8 149,414 - GFF4238 0.59 +0.5 149,414 - GFF4238 0.59 +0.1 149,534 - GFF4238 0.69 +0.3 149,743 + GFF4238 0.88 +0.5 149,744 - GFF4238 0.88 -0.0 149,744 - GFF4238 0.88 +0.2 149,744 - GFF4238 0.88 -0.7 149,744 - GFF4238 0.88 +1.0 149,744 - GFF4238 0.88 -0.1 149,744 - GFF4238 0.88 +0.2 149,842 + -1.2 149,843 - -0.1 149,843 - -0.4 149,963 + +3.2 149,964 - -1.9 149,967 + +0.5 149,967 + -0.5 149,968 - +1.5 149,973 + +0.9 149,974 - +0.5 149,974 - +0.3 150,083 - +0.2 150,083 - -0.5 150,083 - -0.6 150,163 + GFF4239 0.18 -0.6 150,163 + GFF4239 0.18 +0.2 150,163 + GFF4239 0.18 -1.0 150,163 + GFF4239 0.18 +0.4 150,163 + GFF4239 0.18 -0.1 150,164 - GFF4239 0.18 +0.4 150,164 - GFF4239 0.18 +0.1 150,164 - GFF4239 0.18 -1.8 150,164 - GFF4239 0.18 -0.7 150,164 - GFF4239 0.18 +0.2 150,430 + GFF4239 0.45 -0.7 150,430 + GFF4239 0.45 -2.3 150,430 + GFF4239 0.45 -0.1 150,430 + GFF4239 0.45 -0.1 150,431 - GFF4239 0.45 -1.4 150,431 - GFF4239 0.45 -0.9 150,431 - GFF4239 0.45 -1.1 150,650 - GFF4239 0.68 -0.6 150,650 - GFF4239 0.68 -0.6 150,944 + -0.7 150,944 + -0.3 150,945 - +0.3 150,955 + +0.1 150,955 + -0.5 150,955 + +0.4 150,956 - +0.1 150,980 + -0.4 150,980 + -1.2 150,980 + +0.0 150,981 - -1.0 150,981 - -0.2 150,981 - +0.5 151,372 - GFF4240 0.13 +0.6 151,486 - GFF4240 0.19 +0.4 151,530 + GFF4240 0.22 -1.8 151,531 - GFF4240 0.22 -0.1 151,675 - GFF4240 0.30 +0.6 151,932 + GFF4240 0.45 +0.1 151,932 + GFF4240 0.45 -0.4 151,932 + GFF4240 0.45 -1.1 151,932 + GFF4240 0.45 -0.8 151,933 - GFF4240 0.45 -0.3 151,933 - GFF4240 0.45 +0.6
Or see this region's nucleotide sequence