Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4204 and GFF4205 overlap by 4 nucleotides GFF4205 and GFF4206 overlap by 4 nucleotides GFF4206 and GFF4207 are separated by 14 nucleotides
GFF4204 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 120,506 to 121,264
GFF4204
GFF4205 - hypothetical protein, at 121,261 to 121,641
GFF4205
GFF4206 - gamma-BHC dehydrochlorinase, at 121,638 to 122,183
GFF4206
GFF4207 - hypothetical protein, at 122,198 to 123,457
GFF4207
Position (kb) 121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 121.041 kb on + strand, within GFF4204 at 121.041 kb on + strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.047 kb on - strand, within GFF4206 at 122.047 kb on - strand, within GFF4206 at 122.152 kb on - strand at 122.152 kb on - strand at 122.152 kb on - strand at 122.657 kb on + strand, within GFF4207 at 122.658 kb on - strand, within GFF4207
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 121,041 + GFF4204 0.70 -0.1 121,041 + GFF4204 0.70 +0.1 121,042 - GFF4204 0.71 +0.7 121,042 - GFF4204 0.71 +0.2 121,042 - GFF4204 0.71 -2.2 122,046 + GFF4206 0.75 -0.3 122,046 + GFF4206 0.75 +1.1 122,046 + GFF4206 0.75 -0.2 122,046 + GFF4206 0.75 -0.2 122,047 - GFF4206 0.75 +3.2 122,047 - GFF4206 0.75 +0.2 122,152 - +0.6 122,152 - +1.2 122,152 - -0.5 122,657 + GFF4207 0.36 -0.8 122,658 - GFF4207 0.37 -0.1
Or see this region's nucleotide sequence