Strain Fitness in Variovorax sp. SCN45 around GFF415

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF414 and GFF415 are separated by 10 nucleotidesGFF415 and GFF416 are separated by 69 nucleotidesGFF416 and GFF417 are separated by 9 nucleotides GFF414 - Malate dehydrogenase (EC 1.1.1.37), at 450,171 to 451,241 GFF414 GFF415 - hypothetical protein, at 451,252 to 451,581 GFF415 GFF416 - hypothetical protein, at 451,651 to 451,878 GFF416 GFF417 - Aspartate aminotransferase (AspB-4) (EC 2.6.1.1), at 451,888 to 453,075 GFF417 Position (kb) 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 450.345 kb on + strand, within GFF414at 450.345 kb on + strand, within GFF414at 450.345 kb on + strand, within GFF414at 450.345 kb on + strand, within GFF414at 450.346 kb on - strand, within GFF414at 450.346 kb on - strand, within GFF414at 450.346 kb on - strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.340 kb on + strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.341 kb on - strand, within GFF415at 451.387 kb on - strand, within GFF415at 451.474 kb on + strand, within GFF415at 451.474 kb on + strand, within GFF415at 451.474 kb on + strand, within GFF415at 451.474 kb on + strand, within GFF415at 451.474 kb on + strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.475 kb on - strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.499 kb on + strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.500 kb on - strand, within GFF415at 451.591 kb on + strandat 451.592 kb on - strandat 451.592 kb on - strandat 451.592 kb on - strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.615 kb on + strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.616 kb on - strandat 451.889 kb on + strandat 451.889 kb on + strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 451.890 kb on - strandat 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.183 kb on + strand, within GFF417at 452.184 kb on - strand, within GFF417at 452.184 kb on - strand, within GFF417at 452.184 kb on - strand, within GFF417at 452.184 kb on - strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.457 kb on - strand, within GFF417at 452.457 kb on - strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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450,345 + GFF414 0.16 -1.2
450,345 + GFF414 0.16 -0.2
450,345 + GFF414 0.16 +0.2
450,345 + GFF414 0.16 -0.8
450,346 - GFF414 0.16 -0.5
450,346 - GFF414 0.16 -0.3
450,346 - GFF414 0.16 +0.6
450,558 + GFF414 0.36 -0.3
450,558 + GFF414 0.36 +0.3
450,558 + GFF414 0.36 -0.3
450,558 + GFF414 0.36 -0.8
450,558 + GFF414 0.36 -2.0
450,558 + GFF414 0.36 -1.7
450,558 + GFF414 0.36 +0.3
450,558 + GFF414 0.36 -0.6
450,558 + GFF414 0.36 -1.3
450,558 + GFF414 0.36 +1.6
450,558 + GFF414 0.36 +1.3
450,558 + GFF414 0.36 -0.7
450,558 + GFF414 0.36 -2.0
450,558 + GFF414 0.36 +0.3
450,558 + GFF414 0.36 +0.8
450,559 - GFF414 0.36 -0.2
450,559 - GFF414 0.36 +1.3
450,559 - GFF414 0.36 -0.4
450,559 - GFF414 0.36 -1.2
450,559 - GFF414 0.36 -0.5
450,559 - GFF414 0.36 -0.1
450,559 - GFF414 0.36 -0.3
450,559 - GFF414 0.36 -0.6
450,559 - GFF414 0.36 -0.2
450,559 - GFF414 0.36 -0.9
450,559 - GFF414 0.36 -0.4
450,559 - GFF414 0.36 -0.3
450,559 - GFF414 0.36 +0.1
451,340 + GFF415 0.27 -0.2
451,340 + GFF415 0.27 -0.3
451,340 + GFF415 0.27 -0.6
451,340 + GFF415 0.27 -1.2
451,340 + GFF415 0.27 +1.7
451,340 + GFF415 0.27 -0.1
451,340 + GFF415 0.27 -0.6
451,340 + GFF415 0.27 -1.0
451,340 + GFF415 0.27 -0.5
451,341 - GFF415 0.27 -1.9
451,341 - GFF415 0.27 +0.1
451,341 - GFF415 0.27 -0.1
451,341 - GFF415 0.27 -0.3
451,341 - GFF415 0.27 -0.5
451,341 - GFF415 0.27 -0.1
451,341 - GFF415 0.27 -0.7
451,341 - GFF415 0.27 +0.7
451,341 - GFF415 0.27 +1.3
451,341 - GFF415 0.27 +0.3
451,387 - GFF415 0.41 -0.1
451,474 + GFF415 0.67 -0.7
451,474 + GFF415 0.67 -0.3
451,474 + GFF415 0.67 -0.8
451,474 + GFF415 0.67 -0.2
451,474 + GFF415 0.67 +0.3
451,475 - GFF415 0.68 -0.0
451,475 - GFF415 0.68 +2.3
451,475 - GFF415 0.68 -1.4
451,475 - GFF415 0.68 -0.6
451,475 - GFF415 0.68 +0.5
451,475 - GFF415 0.68 +1.0
451,475 - GFF415 0.68 +0.2
451,475 - GFF415 0.68 -0.6
451,499 + GFF415 0.75 -0.4
451,499 + GFF415 0.75 -0.6
451,499 + GFF415 0.75 -0.6
451,499 + GFF415 0.75 +0.1
451,499 + GFF415 0.75 -0.6
451,499 + GFF415 0.75 +1.3
451,499 + GFF415 0.75 -0.6
451,500 - GFF415 0.75 -0.1
451,500 - GFF415 0.75 -0.0
451,500 - GFF415 0.75 -0.9
451,500 - GFF415 0.75 -0.1
451,500 - GFF415 0.75 -0.1
451,500 - GFF415 0.75 -1.0
451,500 - GFF415 0.75 +0.1
451,500 - GFF415 0.75 -0.8
451,591 + -0.8
451,592 - -0.7
451,592 - -0.6
451,592 - -1.6
451,615 + +0.7
451,615 + +0.7
451,615 + +0.9
451,615 + -0.5
451,615 + -0.5
451,615 + -0.7
451,615 + +0.1
451,615 + +0.2
451,615 + -1.4
451,616 - +0.3
451,616 - -0.7
451,616 - +0.3
451,616 - -0.6
451,616 - +0.4
451,616 - -0.0
451,616 - +1.0
451,616 - -0.4
451,889 + -0.6
451,889 + -1.1
451,890 - +0.1
451,890 - -0.0
451,890 - +0.8
451,890 - +0.3
451,890 - -0.3
451,890 - -0.1
451,890 - -1.0
451,890 - -0.9
451,890 - +0.1
452,183 + GFF417 0.25 -0.2
452,183 + GFF417 0.25 -0.0
452,183 + GFF417 0.25 -0.5
452,183 + GFF417 0.25 +0.3
452,183 + GFF417 0.25 -0.3
452,183 + GFF417 0.25 +0.0
452,183 + GFF417 0.25 -0.8
452,183 + GFF417 0.25 -0.1
452,184 - GFF417 0.25 +0.4
452,184 - GFF417 0.25 -0.5
452,184 - GFF417 0.25 +0.5
452,184 - GFF417 0.25 -0.4
452,234 + GFF417 0.29 +0.3
452,234 + GFF417 0.29 +0.7
452,234 + GFF417 0.29 +0.3
452,234 + GFF417 0.29 -1.5
452,234 + GFF417 0.29 -0.3
452,234 + GFF417 0.29 -1.1
452,234 + GFF417 0.29 -0.4
452,234 + GFF417 0.29 -0.1
452,235 - GFF417 0.29 -0.5
452,235 - GFF417 0.29 -0.9
452,235 - GFF417 0.29 +0.5
452,235 - GFF417 0.29 -0.3
452,456 + GFF417 0.48 -0.6
452,456 + GFF417 0.48 -0.0
452,456 + GFF417 0.48 +0.3
452,456 + GFF417 0.48 -0.5
452,456 + GFF417 0.48 -0.9
452,456 + GFF417 0.48 +0.3
452,456 + GFF417 0.48 -1.1
452,456 + GFF417 0.48 +0.3
452,457 - GFF417 0.48 -2.7
452,457 - GFF417 0.48 -2.3
452,498 + GFF417 0.51 -1.6
452,498 + GFF417 0.51 +1.3
452,498 + GFF417 0.51 -0.4
452,498 + GFF417 0.51 +0.6
452,499 - GFF417 0.51 -0.5
452,499 - GFF417 0.51 +0.4
452,499 - GFF417 0.51 +1.0
452,499 - GFF417 0.51 +0.3
452,499 - GFF417 0.51 +0.8

Or see this region's nucleotide sequence