Strain Fitness in Variovorax sp. SCN45 around GFF4122

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4121 and GFF4122 are separated by 79 nucleotidesGFF4122 and GFF4123 are separated by 131 nucleotides GFF4121 - no description, at 24,556 to 24,966 GFF4121 GFF4122 - hypothetical protein, at 25,046 to 25,687 GFF4122 GFF4123 - no description, at 25,819 to 26,691 GFF4123 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.175 kb on + strandat 24.176 kb on - strandat 24.187 kb on - strandat 24.215 kb on + strandat 24.216 kb on - strandat 24.235 kb on - strandat 24.254 kb on - strandat 24.303 kb on + strandat 24.304 kb on - strandat 24.316 kb on + strandat 24.320 kb on + strandat 24.352 kb on + strandat 24.436 kb on - strandat 24.561 kb on + strandat 24.562 kb on - strandat 24.603 kb on + strand, within GFF4121at 24.725 kb on - strand, within GFF4121at 24.783 kb on + strand, within GFF4121at 24.783 kb on + strand, within GFF4121at 24.783 kb on + strand, within GFF4121at 24.784 kb on - strand, within GFF4121at 24.882 kb on - strand, within GFF4121at 24.893 kb on + strand, within GFF4121at 24.894 kb on - strand, within GFF4121at 25.108 kb on + strandat 25.108 kb on + strandat 25.108 kb on + strandat 25.109 kb on - strandat 25.112 kb on + strand, within GFF4122at 25.113 kb on - strand, within GFF4122at 25.207 kb on + strand, within GFF4122at 25.207 kb on + strand, within GFF4122at 25.220 kb on - strand, within GFF4122at 25.387 kb on + strand, within GFF4122at 25.387 kb on + strand, within GFF4122at 25.387 kb on + strand, within GFF4122at 25.387 kb on + strand, within GFF4122at 25.387 kb on + strand, within GFF4122at 25.387 kb on + strand, within GFF4122at 25.388 kb on - strand, within GFF4122at 25.388 kb on - strand, within GFF4122at 25.486 kb on + strand, within GFF4122at 25.508 kb on + strand, within GFF4122at 25.509 kb on - strand, within GFF4122at 25.509 kb on - strand, within GFF4122at 25.509 kb on - strand, within GFF4122at 25.589 kb on + strand, within GFF4122at 25.589 kb on + strand, within GFF4122at 25.590 kb on - strand, within GFF4122at 25.591 kb on + strand, within GFF4122at 25.725 kb on + strandat 25.725 kb on + strandat 25.725 kb on + strandat 25.726 kb on - strandat 25.757 kb on + strandat 25.757 kb on + strandat 25.757 kb on + strandat 25.864 kb on + strandat 25.970 kb on - strand, within GFF4123at 26.135 kb on + strand, within GFF4123at 26.136 kb on - strand, within GFF4123at 26.136 kb on - strand, within GFF4123at 26.136 kb on - strand, within GFF4123at 26.214 kb on - strand, within GFF4123at 26.388 kb on - strand, within GFF4123at 26.483 kb on + strand, within GFF4123at 26.483 kb on + strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.484 kb on - strand, within GFF4123at 26.615 kb on + strandat 26.615 kb on + strandat 26.616 kb on - strandat 26.616 kb on - strandat 26.616 kb on - strandat 26.658 kb on + strandat 26.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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24,175 + -0.1
24,176 - +1.0
24,187 - -1.1
24,215 + -0.8
24,216 - -0.2
24,235 - -0.3
24,254 - +1.2
24,303 + +1.6
24,304 - -0.2
24,316 + +0.4
24,320 + -0.6
24,352 + -0.7
24,436 - -0.1
24,561 + +0.3
24,562 - -0.3
24,603 + GFF4121 0.11 -2.5
24,725 - GFF4121 0.41 -0.7
24,783 + GFF4121 0.55 -1.8
24,783 + GFF4121 0.55 -0.4
24,783 + GFF4121 0.55 -2.4
24,784 - GFF4121 0.55 -0.1
24,882 - GFF4121 0.79 -0.7
24,893 + GFF4121 0.82 -0.4
24,894 - GFF4121 0.82 -0.9
25,108 + -0.9
25,108 + +0.2
25,108 + -0.9
25,109 - -0.1
25,112 + GFF4122 0.10 +0.6
25,113 - GFF4122 0.10 -0.9
25,207 + GFF4122 0.25 +0.1
25,207 + GFF4122 0.25 +0.4
25,220 - GFF4122 0.27 -0.9
25,387 + GFF4122 0.53 +0.9
25,387 + GFF4122 0.53 +1.1
25,387 + GFF4122 0.53 +0.9
25,387 + GFF4122 0.53 +0.1
25,387 + GFF4122 0.53 -0.2
25,387 + GFF4122 0.53 -0.0
25,388 - GFF4122 0.53 -0.6
25,388 - GFF4122 0.53 -0.9
25,486 + GFF4122 0.69 -0.5
25,508 + GFF4122 0.72 -0.1
25,509 - GFF4122 0.72 -0.1
25,509 - GFF4122 0.72 +0.2
25,509 - GFF4122 0.72 -0.4
25,589 + GFF4122 0.85 +0.6
25,589 + GFF4122 0.85 +0.7
25,590 - GFF4122 0.85 +1.9
25,591 + GFF4122 0.85 +1.1
25,725 + -0.2
25,725 + -0.0
25,725 + -0.5
25,726 - -0.9
25,757 + -0.4
25,757 + -1.8
25,757 + +0.0
25,864 + -0.6
25,970 - GFF4123 0.17 -0.0
26,135 + GFF4123 0.36 -0.9
26,136 - GFF4123 0.36 +0.1
26,136 - GFF4123 0.36 +0.2
26,136 - GFF4123 0.36 -1.4
26,214 - GFF4123 0.45 +0.1
26,388 - GFF4123 0.65 -0.1
26,483 + GFF4123 0.76 +0.2
26,483 + GFF4123 0.76 -0.1
26,484 - GFF4123 0.76 +0.3
26,484 - GFF4123 0.76 -1.3
26,484 - GFF4123 0.76 -0.3
26,484 - GFF4123 0.76 +2.2
26,484 - GFF4123 0.76 +0.3
26,484 - GFF4123 0.76 -1.1
26,484 - GFF4123 0.76 -0.4
26,615 + +0.3
26,615 + -0.2
26,616 - -0.5
26,616 - +1.6
26,616 - +0.3
26,658 + +0.3
26,659 - +1.6

Or see this region's nucleotide sequence