Strain Fitness in Variovorax sp. SCN45 around GFF4118

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4117 and GFF4118 are separated by 51 nucleotidesGFF4118 and GFF4119 are separated by 141 nucleotidesGFF4119 and GFF4120 are separated by 98 nucleotides GFF4117 - Translation elongation factor Tu, at 21,552 to 22,748 GFF4117 GFF4118 - no description, at 22,800 to 22,991 GFF4118 GFF4119 - no description, at 23,133 to 23,312 GFF4119 GFF4120 - no description, at 23,411 to 23,950 GFF4120 Position (kb) 22 23Strain fitness (log2 ratio) -1 0 1at 21.832 kb on + strand, within GFF4117at 22.267 kb on + strand, within GFF4117at 22.501 kb on + strand, within GFF4117at 22.535 kb on - strand, within GFF4117at 22.624 kb on + strand, within GFF4117at 23.134 kb on + strandat 23.134 kb on + strandat 23.288 kb on + strand, within GFF4119at 23.288 kb on + strand, within GFF4119at 23.633 kb on - strand, within GFF4120at 23.786 kb on + strand, within GFF4120at 23.866 kb on - strand, within GFF4120at 23.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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21,832 + GFF4117 0.23 -0.5
22,267 + GFF4117 0.60 +1.1
22,501 + GFF4117 0.79 -0.9
22,535 - GFF4117 0.82 -1.2
22,624 + GFF4117 0.90 -0.4
23,134 + +0.2
23,134 + -0.6
23,288 + GFF4119 0.86 -0.6
23,288 + GFF4119 0.86 -0.2
23,633 - GFF4120 0.41 -1.3
23,786 + GFF4120 0.69 +0.6
23,866 - GFF4120 0.84 -0.5
23,949 - -0.1

Or see this region's nucleotide sequence