Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4113 and GFF4114 are separated by 108 nucleotides GFF4114 and GFF4115 are separated by 40 nucleotides GFF4115 and GFF4116 are separated by 232 nucleotides
GFF4113 - hypothetical protein, at 16,809 to 18,176
GFF4113
GFF4114 - hypothetical protein, at 18,285 to 20,066
GFF4114
GFF4115 - Sensor protein, at 20,107 to 20,790
GFF4115
GFF4116 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 21,023 to 21,457
GFF4116
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 17.452 kb on + strand, within GFF4113 at 17.452 kb on + strand, within GFF4113 at 17.452 kb on + strand, within GFF4113 at 17.503 kb on + strand, within GFF4113 at 17.681 kb on - strand, within GFF4113 at 17.897 kb on - strand, within GFF4113 at 18.224 kb on + strand at 18.954 kb on + strand, within GFF4114 at 18.955 kb on - strand, within GFF4114 at 19.018 kb on + strand, within GFF4114 at 19.537 kb on + strand, within GFF4114 at 19.537 kb on + strand, within GFF4114 at 19.973 kb on - strand at 20.902 kb on + strand at 20.917 kb on - strand at 20.917 kb on - strand at 20.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,452 + GFF4113 0.47 -2.7 17,452 + GFF4113 0.47 -0.8 17,452 + GFF4113 0.47 +0.5 17,503 + GFF4113 0.51 -0.8 17,681 - GFF4113 0.64 -1.2 17,897 - GFF4113 0.80 -0.1 18,224 + -0.8 18,954 + GFF4114 0.38 -0.8 18,955 - GFF4114 0.38 +0.3 19,018 + GFF4114 0.41 +0.3 19,537 + GFF4114 0.70 +0.4 19,537 + GFF4114 0.70 +0.1 19,973 - +0.3 20,902 + -0.0 20,917 - -0.4 20,917 - -0.5 20,917 - +0.3
Or see this region's nucleotide sequence