Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4089 and GFF4090 overlap by 1 nucleotides GFF4090 and GFF4091 are separated by 0 nucleotides GFF4091 and GFF4092 are separated by 59 nucleotides GFF4092 and GFF4093 are separated by 39 nucleotides
GFF4089 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 301,874 to 302,611
GFF4089
GFF4090 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 302,611 to 303,300
GFF4090
GFF4091 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 303,301 to 304,044
GFF4091
GFF4092 - Copper tolerance protein, at 304,104 to 304,604
GFF4092
GFF4093 - no description, at 304,644 to 304,946
GFF4093
Position (kb) 303
304
305 Strain fitness (log2 ratio) -1
0
1 at 302.477 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.540 kb on + strand at 302.541 kb on - strand at 302.789 kb on - strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.906 kb on - strand, within GFF4090 at 302.944 kb on + strand, within GFF4090 at 302.947 kb on + strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.340 kb on + strand at 303.341 kb on - strand at 303.496 kb on - strand, within GFF4091 at 303.525 kb on - strand, within GFF4091 at 304.283 kb on + strand, within GFF4092 at 304.284 kb on - strand, within GFF4092 at 304.455 kb on + strand, within GFF4092 at 304.551 kb on + strand, within GFF4092 at 304.646 kb on - strand at 304.655 kb on - strand at 304.814 kb on - strand, within GFF4093 at 304.828 kb on + strand, within GFF4093 at 304.906 kb on + strand, within GFF4093 at 304.907 kb on - strand, within GFF4093 at 304.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 302,477 + GFF4089 0.82 -0.4 302,525 + GFF4089 0.88 +0.1 302,525 + GFF4089 0.88 -0.2 302,525 + GFF4089 0.88 -0.6 302,525 + GFF4089 0.88 +1.5 302,540 + -0.9 302,541 - -0.2 302,789 - GFF4090 0.26 -0.6 302,905 + GFF4090 0.43 -0.8 302,905 + GFF4090 0.43 +0.3 302,906 - GFF4090 0.43 -0.6 302,944 + GFF4090 0.48 -0.7 302,947 + GFF4090 0.49 +0.5 303,206 - GFF4090 0.86 -1.3 303,206 - GFF4090 0.86 -0.2 303,206 - GFF4090 0.86 -0.1 303,340 + -0.1 303,341 - -0.8 303,496 - GFF4091 0.26 -0.6 303,525 - GFF4091 0.30 -1.2 304,283 + GFF4092 0.36 +0.5 304,284 - GFF4092 0.36 -0.1 304,455 + GFF4092 0.70 -1.2 304,551 + GFF4092 0.89 +0.4 304,646 - -0.4 304,655 - -0.2 304,814 - GFF4093 0.56 -0.3 304,828 + GFF4093 0.61 -0.7 304,906 + GFF4093 0.86 -0.2 304,907 - GFF4093 0.87 -0.9 304,935 - -0.0
Or see this region's nucleotide sequence