Strain Fitness in Variovorax sp. SCN45 around GFF4006

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4004 and GFF4005 are separated by 58 nucleotidesGFF4005 and GFF4006 are separated by 97 nucleotidesGFF4006 and GFF4007 are separated by 40 nucleotides GFF4004 - Homoserine kinase (EC 2.7.1.39), at 209,477 to 210,541 GFF4004 GFF4005 - hypothetical protein, at 210,600 to 210,977 GFF4005 GFF4006 - DNA polymerase I (EC 2.7.7.7), at 211,075 to 213,891 GFF4006 GFF4007 - Glutamate carboxypeptidase (EC 3.4.17.11), at 213,932 to 215,230 GFF4007 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1at 210.694 kb on + strand, within GFF4005at 210.695 kb on - strand, within GFF4005at 210.695 kb on - strand, within GFF4005at 210.971 kb on + strandat 210.971 kb on + strandat 210.971 kb on + strandat 210.972 kb on - strandat 210.972 kb on - strandat 210.972 kb on - strandat 210.977 kb on + strandat 210.977 kb on + strandat 210.977 kb on + strandat 210.978 kb on - strandat 210.978 kb on - strandat 210.978 kb on - strandat 210.978 kb on - strandat 210.988 kb on + strandat 210.988 kb on + strandat 210.988 kb on + strandat 210.988 kb on + strandat 210.988 kb on + strandat 210.989 kb on - strandat 210.989 kb on - strandat 212.098 kb on + strand, within GFF4006at 212.098 kb on + strand, within GFF4006at 212.098 kb on + strand, within GFF4006at 212.099 kb on - strand, within GFF4006at 212.099 kb on - strand, within GFF4006at 212.099 kb on - strand, within GFF4006at 212.254 kb on + strand, within GFF4006at 212.254 kb on + strand, within GFF4006at 212.254 kb on + strand, within GFF4006at 212.275 kb on + strand, within GFF4006at 212.356 kb on + strand, within GFF4006at 212.378 kb on - strand, within GFF4006at 212.378 kb on - strand, within GFF4006at 212.449 kb on + strand, within GFF4006at 212.596 kb on + strand, within GFF4006at 212.596 kb on + strand, within GFF4006at 212.683 kb on + strand, within GFF4006at 212.683 kb on + strand, within GFF4006at 212.815 kb on + strand, within GFF4006at 212.816 kb on - strand, within GFF4006at 212.816 kb on - strand, within GFF4006at 212.816 kb on - strand, within GFF4006at 213.012 kb on + strand, within GFF4006at 213.022 kb on + strand, within GFF4006at 213.022 kb on + strand, within GFF4006at 213.022 kb on + strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.023 kb on - strand, within GFF4006at 213.079 kb on + strand, within GFF4006at 213.079 kb on + strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.080 kb on - strand, within GFF4006at 213.400 kb on + strand, within GFF4006at 213.463 kb on + strand, within GFF4006at 213.463 kb on + strand, within GFF4006at 213.464 kb on - strand, within GFF4006at 213.464 kb on - strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.505 kb on + strand, within GFF4006at 213.544 kb on + strand, within GFF4006at 213.544 kb on + strand, within GFF4006at 213.574 kb on + strand, within GFF4006at 213.692 kb on + strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 213.693 kb on - strandat 214.202 kb on + strand, within GFF4007at 214.202 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.307 kb on + strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.308 kb on - strand, within GFF4007at 214.362 kb on - strand, within GFF4007at 214.362 kb on - strand, within GFF4007at 214.362 kb on - strand, within GFF4007at 214.449 kb on - strand, within GFF4007at 214.449 kb on - strand, within GFF4007at 214.565 kb on + strand, within GFF4007at 214.565 kb on + strand, within GFF4007at 214.565 kb on + strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.566 kb on - strand, within GFF4007at 214.683 kb on - strand, within GFF4007at 214.683 kb on - strand, within GFF4007at 214.683 kb on - strand, within GFF4007at 214.841 kb on + strand, within GFF4007at 214.842 kb on - strand, within GFF4007at 214.842 kb on - strand, within GFF4007

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
210,694 + GFF4005 0.25 -0.8
210,695 - GFF4005 0.25 +0.1
210,695 - GFF4005 0.25 -0.1
210,971 + -0.2
210,971 + -0.9
210,971 + -0.2
210,972 - -0.9
210,972 - -2.0
210,972 - -0.7
210,977 + +0.4
210,977 + -1.2
210,977 + -1.2
210,978 - -0.2
210,978 - -0.2
210,978 - -0.8
210,978 - -0.6
210,988 + +0.1
210,988 + +0.8
210,988 + -0.2
210,988 + +0.5
210,988 + -0.6
210,989 - -0.2
210,989 - -0.5
212,098 + GFF4006 0.36 -2.3
212,098 + GFF4006 0.36 +0.4
212,098 + GFF4006 0.36 +0.6
212,099 - GFF4006 0.36 +0.5
212,099 - GFF4006 0.36 -0.2
212,099 - GFF4006 0.36 -1.3
212,254 + GFF4006 0.42 +0.0
212,254 + GFF4006 0.42 +0.2
212,254 + GFF4006 0.42 +0.1
212,275 + GFF4006 0.43 -2.3
212,356 + GFF4006 0.45 -0.3
212,378 - GFF4006 0.46 -0.8
212,378 - GFF4006 0.46 -1.4
212,449 + GFF4006 0.49 +0.5
212,596 + GFF4006 0.54 -1.5
212,596 + GFF4006 0.54 -0.3
212,683 + GFF4006 0.57 -0.0
212,683 + GFF4006 0.57 -1.3
212,815 + GFF4006 0.62 -0.2
212,816 - GFF4006 0.62 -1.3
212,816 - GFF4006 0.62 -0.5
212,816 - GFF4006 0.62 -0.5
213,012 + GFF4006 0.69 -2.6
213,022 + GFF4006 0.69 +0.5
213,022 + GFF4006 0.69 -0.8
213,022 + GFF4006 0.69 -0.7
213,023 - GFF4006 0.69 -0.4
213,023 - GFF4006 0.69 +0.1
213,023 - GFF4006 0.69 -1.0
213,023 - GFF4006 0.69 -0.5
213,023 - GFF4006 0.69 -1.2
213,079 + GFF4006 0.71 -0.5
213,079 + GFF4006 0.71 -1.5
213,080 - GFF4006 0.71 -2.9
213,080 - GFF4006 0.71 -0.3
213,080 - GFF4006 0.71 -1.4
213,080 - GFF4006 0.71 -1.0
213,080 - GFF4006 0.71 -1.1
213,080 - GFF4006 0.71 -1.8
213,400 + GFF4006 0.83 -0.3
213,463 + GFF4006 0.85 +1.1
213,463 + GFF4006 0.85 -2.2
213,464 - GFF4006 0.85 -0.9
213,464 - GFF4006 0.85 -2.3
213,505 + GFF4006 0.86 +0.4
213,505 + GFF4006 0.86 -0.3
213,505 + GFF4006 0.86 -1.2
213,505 + GFF4006 0.86 -0.5
213,544 + GFF4006 0.88 -0.4
213,544 + GFF4006 0.88 -2.3
213,574 + GFF4006 0.89 -0.3
213,692 + +0.4
213,693 - -0.9
213,693 - -1.0
213,693 - -1.0
213,693 - +0.5
213,693 - -0.0
213,693 - -0.6
214,202 + GFF4007 0.21 -0.7
214,202 + GFF4007 0.21 -0.9
214,307 + GFF4007 0.29 -1.9
214,307 + GFF4007 0.29 -1.2
214,307 + GFF4007 0.29 -0.5
214,307 + GFF4007 0.29 -0.0
214,307 + GFF4007 0.29 +0.2
214,308 - GFF4007 0.29 -2.2
214,308 - GFF4007 0.29 -0.2
214,308 - GFF4007 0.29 +0.5
214,308 - GFF4007 0.29 -0.1
214,308 - GFF4007 0.29 -0.3
214,308 - GFF4007 0.29 -0.3
214,308 - GFF4007 0.29 -0.1
214,362 - GFF4007 0.33 -0.0
214,362 - GFF4007 0.33 -0.5
214,362 - GFF4007 0.33 +1.7
214,449 - GFF4007 0.40 -0.3
214,449 - GFF4007 0.40 +0.8
214,565 + GFF4007 0.49 -1.0
214,565 + GFF4007 0.49 -0.6
214,565 + GFF4007 0.49 -0.9
214,566 - GFF4007 0.49 +1.0
214,566 - GFF4007 0.49 -0.2
214,566 - GFF4007 0.49 +0.4
214,566 - GFF4007 0.49 -0.8
214,566 - GFF4007 0.49 -0.2
214,683 - GFF4007 0.58 -1.5
214,683 - GFF4007 0.58 -0.5
214,683 - GFF4007 0.58 +1.1
214,841 + GFF4007 0.70 +1.0
214,842 - GFF4007 0.70 -0.6
214,842 - GFF4007 0.70 -0.1

Or see this region's nucleotide sequence