Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3983 and GFF3984 overlap by 4 nucleotides GFF3984 and GFF3985 overlap by 11 nucleotides GFF3985 and GFF3986 are separated by 4 nucleotides GFF3986 and GFF3987 are separated by 53 nucleotides
GFF3983 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 186,602 to 188,389
GFF3983
GFF3984 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 188,386 to 189,117
GFF3984
GFF3985 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 189,107 to 190,696
GFF3985
GFF3986 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 190,701 to 191,447
GFF3986
GFF3987 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 191,501 to 192,277
GFF3987
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.385 kb on + strand at 188.386 kb on - strand at 188.746 kb on + strand, within GFF3984 at 189.007 kb on + strand, within GFF3984 at 189.008 kb on - strand, within GFF3984 at 189.008 kb on - strand, within GFF3984 at 189.085 kb on + strand at 189.086 kb on - strand at 189.416 kb on + strand, within GFF3985 at 189.417 kb on - strand, within GFF3985 at 189.417 kb on - strand, within GFF3985 at 189.417 kb on - strand, within GFF3985 at 189.525 kb on + strand, within GFF3985 at 189.526 kb on - strand, within GFF3985 at 189.526 kb on - strand, within GFF3985 at 189.647 kb on + strand, within GFF3985 at 189.647 kb on + strand, within GFF3985 at 189.647 kb on + strand, within GFF3985 at 189.648 kb on - strand, within GFF3985 at 189.648 kb on - strand, within GFF3985 at 189.649 kb on + strand, within GFF3985 at 189.650 kb on - strand, within GFF3985 at 189.661 kb on + strand, within GFF3985 at 189.702 kb on - strand, within GFF3985 at 189.801 kb on - strand, within GFF3985 at 189.905 kb on + strand, within GFF3985 at 189.905 kb on + strand, within GFF3985 at 189.906 kb on - strand, within GFF3985 at 189.906 kb on - strand, within GFF3985 at 189.906 kb on - strand, within GFF3985 at 190.226 kb on + strand, within GFF3985 at 190.226 kb on + strand, within GFF3985 at 190.227 kb on - strand, within GFF3985 at 190.227 kb on - strand, within GFF3985 at 190.448 kb on + strand, within GFF3985 at 190.562 kb on + strand at 190.694 kb on + strand at 190.694 kb on + strand at 190.695 kb on - strand at 190.695 kb on - strand at 190.695 kb on - strand at 191.097 kb on - strand, within GFF3986 at 191.163 kb on + strand, within GFF3986 at 191.164 kb on - strand, within GFF3986 at 191.164 kb on - strand, within GFF3986 at 191.373 kb on + strand at 191.504 kb on + strand at 191.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 188,385 + -1.2 188,386 - +0.7 188,746 + GFF3984 0.49 +0.8 189,007 + GFF3984 0.85 -0.8 189,008 - GFF3984 0.85 -0.1 189,008 - GFF3984 0.85 +0.5 189,085 + -0.6 189,086 - -0.3 189,416 + GFF3985 0.19 -1.8 189,417 - GFF3985 0.19 +0.8 189,417 - GFF3985 0.19 -2.2 189,417 - GFF3985 0.19 +0.5 189,525 + GFF3985 0.26 -0.5 189,526 - GFF3985 0.26 -0.5 189,526 - GFF3985 0.26 -0.3 189,647 + GFF3985 0.34 -0.5 189,647 + GFF3985 0.34 -1.0 189,647 + GFF3985 0.34 -1.3 189,648 - GFF3985 0.34 +0.0 189,648 - GFF3985 0.34 +0.1 189,649 + GFF3985 0.34 +0.2 189,650 - GFF3985 0.34 -0.0 189,661 + GFF3985 0.35 +0.1 189,702 - GFF3985 0.37 -0.3 189,801 - GFF3985 0.44 +0.2 189,905 + GFF3985 0.50 -0.2 189,905 + GFF3985 0.50 -0.0 189,906 - GFF3985 0.50 +0.5 189,906 - GFF3985 0.50 -0.5 189,906 - GFF3985 0.50 +1.3 190,226 + GFF3985 0.70 -0.6 190,226 + GFF3985 0.70 +1.0 190,227 - GFF3985 0.70 -1.0 190,227 - GFF3985 0.70 -0.9 190,448 + GFF3985 0.84 -0.3 190,562 + -0.3 190,694 + -0.5 190,694 + -0.6 190,695 - -0.5 190,695 - -1.3 190,695 - +2.1 191,097 - GFF3986 0.53 -0.9 191,163 + GFF3986 0.62 -1.1 191,164 - GFF3986 0.62 +0.3 191,164 - GFF3986 0.62 -2.9 191,373 + -0.0 191,504 + -0.8 191,505 - -0.1
Or see this region's nucleotide sequence