Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3965 and GFF3966 are separated by 41 nucleotides GFF3966 and GFF3967 are separated by 144 nucleotides GFF3967 and GFF3968 are separated by 4 nucleotides
GFF3965 - Alcohol dehydrogenase, zinc-binding, at 166,425 to 167,309
GFF3965
GFF3966 - Homoprotocatechuate degradative operon repressor, at 167,351 to 167,827
GFF3966
GFF3967 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 167,972 to 170,164
GFF3967
GFF3968 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 170,169 to 171,674
GFF3968
Position (kb) 167
168
169
170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 166.982 kb on - strand, within GFF3965 at 166.982 kb on - strand, within GFF3965 at 166.982 kb on - strand, within GFF3965 at 166.985 kb on + strand, within GFF3965 at 166.985 kb on + strand, within GFF3965 at 166.985 kb on + strand, within GFF3965 at 166.985 kb on + strand, within GFF3965 at 166.985 kb on + strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 166.986 kb on - strand, within GFF3965 at 167.058 kb on + strand, within GFF3965 at 167.784 kb on + strand at 168.101 kb on + strand at 168.102 kb on - strand at 168.237 kb on - strand, within GFF3967 at 168.360 kb on - strand, within GFF3967 at 168.783 kb on - strand, within GFF3967 at 168.783 kb on - strand, within GFF3967 at 168.783 kb on - strand, within GFF3967 at 168.830 kb on + strand, within GFF3967 at 168.838 kb on + strand, within GFF3967 at 168.839 kb on - strand, within GFF3967 at 168.855 kb on - strand, within GFF3967 at 169.044 kb on - strand, within GFF3967 at 169.553 kb on + strand, within GFF3967 at 169.553 kb on + strand, within GFF3967 at 169.553 kb on + strand, within GFF3967 at 169.554 kb on - strand, within GFF3967 at 169.554 kb on - strand, within GFF3967 at 169.554 kb on - strand, within GFF3967 at 169.686 kb on - strand, within GFF3967 at 169.686 kb on - strand, within GFF3967 at 169.686 kb on - strand, within GFF3967 at 170.042 kb on + strand at 170.043 kb on - strand at 170.154 kb on - strand at 170.331 kb on + strand, within GFF3968 at 170.331 kb on + strand, within GFF3968 at 170.331 kb on + strand, within GFF3968 at 170.332 kb on - strand, within GFF3968 at 170.332 kb on - strand, within GFF3968 at 170.332 kb on - strand, within GFF3968 at 170.973 kb on + strand, within GFF3968 at 170.985 kb on + strand, within GFF3968
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 166,982 - GFF3965 0.63 +0.5 166,982 - GFF3965 0.63 -0.5 166,982 - GFF3965 0.63 -0.0 166,985 + GFF3965 0.63 -0.5 166,985 + GFF3965 0.63 +0.5 166,985 + GFF3965 0.63 -0.4 166,985 + GFF3965 0.63 -0.1 166,985 + GFF3965 0.63 -0.5 166,986 - GFF3965 0.63 +1.2 166,986 - GFF3965 0.63 -1.9 166,986 - GFF3965 0.63 +1.1 166,986 - GFF3965 0.63 +0.1 166,986 - GFF3965 0.63 -0.2 166,986 - GFF3965 0.63 +0.7 166,986 - GFF3965 0.63 -0.0 167,058 + GFF3965 0.72 -0.6 167,784 + -1.2 168,101 + +0.5 168,102 - +0.2 168,237 - GFF3967 0.12 -0.2 168,360 - GFF3967 0.18 +0.7 168,783 - GFF3967 0.37 +0.5 168,783 - GFF3967 0.37 +1.5 168,783 - GFF3967 0.37 +0.8 168,830 + GFF3967 0.39 -0.5 168,838 + GFF3967 0.39 -0.6 168,839 - GFF3967 0.40 +0.2 168,855 - GFF3967 0.40 +0.3 169,044 - GFF3967 0.49 -1.6 169,553 + GFF3967 0.72 +0.1 169,553 + GFF3967 0.72 -1.2 169,553 + GFF3967 0.72 +0.7 169,554 - GFF3967 0.72 -0.2 169,554 - GFF3967 0.72 +0.5 169,554 - GFF3967 0.72 -0.2 169,686 - GFF3967 0.78 -0.1 169,686 - GFF3967 0.78 -0.1 169,686 - GFF3967 0.78 -0.8 170,042 + -0.3 170,043 - +1.5 170,154 - -0.8 170,331 + GFF3968 0.11 +1.1 170,331 + GFF3968 0.11 -0.7 170,331 + GFF3968 0.11 -0.5 170,332 - GFF3968 0.11 -0.4 170,332 - GFF3968 0.11 -0.2 170,332 - GFF3968 0.11 -0.6 170,973 + GFF3968 0.53 -0.2 170,985 + GFF3968 0.54 +0.0
Or see this region's nucleotide sequence