Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3873 and GFF3874 are separated by 13 nucleotides GFF3874 and GFF3875 overlap by 4 nucleotides GFF3875 and GFF3876 are separated by 17 nucleotides GFF3876 and GFF3877 overlap by 1 nucleotides
GFF3873 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 71,073 to 71,834
GFF3873
GFF3874 - Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7), at 71,848 to 72,240
GFF3874
GFF3875 - beta-N-acetylglucosaminidase (EC 3.2.1.52), at 72,237 to 73,319
GFF3875
GFF3876 - UTP pyrophosphatase (EC 3.6.1.9), at 73,337 to 73,852
GFF3876
GFF3877 - Uncharacterized chaperone protein YegD, at 73,852 to 75,132
GFF3877
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.854 kb on + strand at 71.854 kb on + strand at 71.854 kb on + strand at 71.855 kb on - strand at 71.856 kb on - strand at 72.004 kb on + strand, within GFF3874 at 72.004 kb on + strand, within GFF3874 at 72.005 kb on - strand, within GFF3874 at 72.005 kb on - strand, within GFF3874 at 72.205 kb on + strand at 72.235 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.236 kb on + strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.861 kb on + strand, within GFF3875 at 72.861 kb on + strand, within GFF3875 at 72.861 kb on + strand, within GFF3875 at 72.862 kb on - strand, within GFF3875 at 72.912 kb on + strand, within GFF3875 at 72.913 kb on - strand, within GFF3875 at 73.035 kb on + strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.036 kb on - strand, within GFF3875 at 73.059 kb on + strand, within GFF3875 at 73.059 kb on + strand, within GFF3875 at 73.060 kb on - strand, within GFF3875 at 73.284 kb on + strand at 73.284 kb on + strand at 73.285 kb on - strand at 73.392 kb on + strand, within GFF3876 at 73.392 kb on + strand, within GFF3876 at 73.392 kb on + strand, within GFF3876 at 73.392 kb on + strand, within GFF3876 at 73.393 kb on - strand, within GFF3876 at 73.393 kb on - strand, within GFF3876 at 73.393 kb on - strand, within GFF3876 at 73.422 kb on + strand, within GFF3876 at 73.422 kb on + strand, within GFF3876 at 73.423 kb on - strand, within GFF3876 at 73.423 kb on - strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.452 kb on + strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.453 kb on - strand, within GFF3876 at 73.529 kb on + strand, within GFF3876 at 73.529 kb on + strand, within GFF3876 at 73.529 kb on + strand, within GFF3876 at 73.529 kb on + strand, within GFF3876 at 73.529 kb on + strand, within GFF3876 at 73.530 kb on - strand, within GFF3876 at 73.530 kb on - strand, within GFF3876 at 73.530 kb on - strand, within GFF3876 at 73.631 kb on + strand, within GFF3876 at 73.632 kb on - strand, within GFF3876 at 73.632 kb on - strand, within GFF3876 at 73.632 kb on - strand, within GFF3876 at 73.632 kb on - strand, within GFF3876 at 73.655 kb on + strand, within GFF3876 at 73.655 kb on + strand, within GFF3876 at 73.656 kb on - strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.710 kb on + strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.711 kb on - strand, within GFF3876 at 73.716 kb on + strand, within GFF3876 at 73.716 kb on + strand, within GFF3876 at 73.716 kb on + strand, within GFF3876 at 73.716 kb on + strand, within GFF3876 at 73.716 kb on + strand, within GFF3876 at 73.717 kb on - strand, within GFF3876 at 73.717 kb on - strand, within GFF3876 at 73.717 kb on - strand, within GFF3876 at 73.717 kb on - strand, within GFF3876 at 73.717 kb on - strand, within GFF3876 at 73.845 kb on + strand at 73.845 kb on + strand at 73.846 kb on - strand at 73.846 kb on - strand at 73.846 kb on - strand at 73.846 kb on - strand at 73.846 kb on - strand at 74.000 kb on + strand, within GFF3877 at 74.000 kb on + strand, within GFF3877 at 74.001 kb on - strand, within GFF3877 at 74.001 kb on - strand, within GFF3877 at 74.001 kb on - strand, within GFF3877 at 74.001 kb on - strand, within GFF3877 at 74.001 kb on - strand, within GFF3877 at 74.001 kb on - strand, within GFF3877 at 74.276 kb on + strand, within GFF3877 at 74.276 kb on + strand, within GFF3877 at 74.277 kb on - strand, within GFF3877 at 74.277 kb on - strand, within GFF3877 at 74.277 kb on - strand, within GFF3877
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 71,854 + -0.4 71,854 + -0.2 71,854 + -0.2 71,855 - -0.7 71,856 - -0.2 72,004 + GFF3874 0.40 -1.0 72,004 + GFF3874 0.40 +0.4 72,005 - GFF3874 0.40 -1.1 72,005 - GFF3874 0.40 -0.6 72,205 + -0.9 72,235 + +0.7 72,236 + -0.4 72,236 + +0.8 72,236 + -0.0 72,236 + -0.2 72,236 + -1.4 72,236 + +0.7 72,236 + -0.7 72,237 - +0.1 72,237 - -0.1 72,237 - -1.3 72,237 - -1.3 72,237 - -1.6 72,237 - -0.4 72,237 - -0.6 72,237 - +0.4 72,237 - +0.0 72,237 - +1.0 72,237 - -0.4 72,237 - -1.0 72,237 - +0.3 72,861 + GFF3875 0.58 -0.0 72,861 + GFF3875 0.58 +0.1 72,861 + GFF3875 0.58 -0.0 72,862 - GFF3875 0.58 -1.0 72,912 + GFF3875 0.62 -0.1 72,913 - GFF3875 0.62 -0.9 73,035 + GFF3875 0.74 -0.8 73,036 - GFF3875 0.74 -0.3 73,036 - GFF3875 0.74 -0.8 73,036 - GFF3875 0.74 -1.5 73,036 - GFF3875 0.74 -1.5 73,036 - GFF3875 0.74 +0.8 73,059 + GFF3875 0.76 -1.5 73,059 + GFF3875 0.76 -0.7 73,060 - GFF3875 0.76 -0.9 73,284 + +1.5 73,284 + -0.5 73,285 - -0.1 73,392 + GFF3876 0.11 -0.5 73,392 + GFF3876 0.11 +0.1 73,392 + GFF3876 0.11 -0.1 73,392 + GFF3876 0.11 +0.7 73,393 - GFF3876 0.11 -0.2 73,393 - GFF3876 0.11 +2.1 73,393 - GFF3876 0.11 -0.4 73,422 + GFF3876 0.16 -0.5 73,422 + GFF3876 0.16 -0.4 73,423 - GFF3876 0.17 -0.6 73,423 - GFF3876 0.17 -0.7 73,452 + GFF3876 0.22 -0.6 73,452 + GFF3876 0.22 -0.2 73,452 + GFF3876 0.22 +0.3 73,452 + GFF3876 0.22 -0.5 73,452 + GFF3876 0.22 +0.4 73,452 + GFF3876 0.22 +1.1 73,452 + GFF3876 0.22 +0.4 73,452 + GFF3876 0.22 +1.1 73,452 + GFF3876 0.22 -0.6 73,452 + GFF3876 0.22 -0.7 73,452 + GFF3876 0.22 -0.4 73,453 - GFF3876 0.22 +0.0 73,453 - GFF3876 0.22 +0.4 73,453 - GFF3876 0.22 -0.6 73,453 - GFF3876 0.22 -1.9 73,453 - GFF3876 0.22 -0.1 73,453 - GFF3876 0.22 -1.3 73,453 - GFF3876 0.22 -0.5 73,453 - GFF3876 0.22 -1.2 73,453 - GFF3876 0.22 -0.7 73,453 - GFF3876 0.22 -0.8 73,453 - GFF3876 0.22 +0.7 73,453 - GFF3876 0.22 -0.4 73,529 + GFF3876 0.37 -0.0 73,529 + GFF3876 0.37 -0.0 73,529 + GFF3876 0.37 -0.2 73,529 + GFF3876 0.37 -0.3 73,529 + GFF3876 0.37 -0.3 73,530 - GFF3876 0.37 +0.5 73,530 - GFF3876 0.37 -0.3 73,530 - GFF3876 0.37 +0.6 73,631 + GFF3876 0.57 -0.9 73,632 - GFF3876 0.57 -1.0 73,632 - GFF3876 0.57 +0.3 73,632 - GFF3876 0.57 -0.9 73,632 - GFF3876 0.57 +0.5 73,655 + GFF3876 0.62 -0.8 73,655 + GFF3876 0.62 -0.1 73,656 - GFF3876 0.62 -0.6 73,710 + GFF3876 0.72 +0.0 73,710 + GFF3876 0.72 -0.1 73,710 + GFF3876 0.72 -0.5 73,710 + GFF3876 0.72 +0.3 73,710 + GFF3876 0.72 -0.5 73,710 + GFF3876 0.72 -0.5 73,710 + GFF3876 0.72 +0.1 73,710 + GFF3876 0.72 +0.5 73,710 + GFF3876 0.72 +0.2 73,710 + GFF3876 0.72 -0.8 73,711 - GFF3876 0.72 -0.5 73,711 - GFF3876 0.72 -0.0 73,711 - GFF3876 0.72 -0.6 73,711 - GFF3876 0.72 -0.2 73,711 - GFF3876 0.72 +0.2 73,711 - GFF3876 0.72 -0.1 73,711 - GFF3876 0.72 +0.7 73,711 - GFF3876 0.72 -0.3 73,711 - GFF3876 0.72 -0.6 73,711 - GFF3876 0.72 -0.3 73,716 + GFF3876 0.73 +1.5 73,716 + GFF3876 0.73 +0.2 73,716 + GFF3876 0.73 +0.6 73,716 + GFF3876 0.73 +0.5 73,716 + GFF3876 0.73 -1.0 73,717 - GFF3876 0.74 -0.8 73,717 - GFF3876 0.74 -0.6 73,717 - GFF3876 0.74 -0.1 73,717 - GFF3876 0.74 -1.4 73,717 - GFF3876 0.74 +0.2 73,845 + -1.0 73,845 + -0.8 73,846 - +1.3 73,846 - -0.3 73,846 - -1.6 73,846 - +0.3 73,846 - +0.4 74,000 + GFF3877 0.12 +0.2 74,000 + GFF3877 0.12 +0.3 74,001 - GFF3877 0.12 -0.2 74,001 - GFF3877 0.12 -0.9 74,001 - GFF3877 0.12 -0.5 74,001 - GFF3877 0.12 -0.4 74,001 - GFF3877 0.12 -0.8 74,001 - GFF3877 0.12 +0.1 74,276 + GFF3877 0.33 +0.5 74,276 + GFF3877 0.33 -0.9 74,277 - GFF3877 0.33 -0.3 74,277 - GFF3877 0.33 +0.5 74,277 - GFF3877 0.33 -0.6
Or see this region's nucleotide sequence