Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3819 and GFF3820 are separated by 5 nucleotides GFF3820 and GFF3821 overlap by 1 nucleotides
GFF3819 - hypothetical protein, at 4,396 to 5,703
GFF3819
GFF3820 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 5,709 to 7,142
GFF3820
GFF3821 - RND efflux system, inner membrane transporter, at 7,142 to 10,312
GFF3821
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.750 kb on + strand, within GFF3819 at 5.017 kb on + strand, within GFF3819 at 5.050 kb on + strand, within GFF3819 at 5.050 kb on + strand, within GFF3819 at 5.050 kb on + strand, within GFF3819 at 5.051 kb on - strand, within GFF3819 at 5.051 kb on - strand, within GFF3819 at 5.051 kb on - strand, within GFF3819 at 5.557 kb on + strand, within GFF3819 at 5.557 kb on + strand, within GFF3819 at 5.558 kb on - strand, within GFF3819 at 5.641 kb on + strand at 5.710 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.806 kb on + strand at 5.809 kb on + strand at 5.810 kb on - strand at 5.839 kb on + strand at 5.839 kb on + strand at 5.840 kb on - strand at 5.840 kb on - strand at 5.998 kb on + strand, within GFF3820 at 5.998 kb on + strand, within GFF3820 at 5.999 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.721 kb on + strand, within GFF3820 at 6.722 kb on - strand, within GFF3820 at 6.749 kb on - strand, within GFF3820 at 6.749 kb on - strand, within GFF3820 at 6.749 kb on - strand, within GFF3820 at 6.862 kb on + strand, within GFF3820 at 7.051 kb on + strand at 7.051 kb on + strand at 7.195 kb on + strand at 7.195 kb on + strand at 7.196 kb on - strand at 7.196 kb on - strand at 7.533 kb on + strand, within GFF3821 at 7.534 kb on - strand, within GFF3821 at 7.674 kb on - strand, within GFF3821 at 7.680 kb on + strand, within GFF3821 at 7.680 kb on + strand, within GFF3821 at 7.680 kb on + strand, within GFF3821 at 7.681 kb on - strand, within GFF3821 at 7.681 kb on - strand, within GFF3821 at 7.741 kb on - strand, within GFF3821 at 7.836 kb on + strand, within GFF3821 at 7.837 kb on - strand, within GFF3821 at 7.854 kb on + strand, within GFF3821 at 7.878 kb on + strand, within GFF3821 at 7.878 kb on + strand, within GFF3821 at 7.878 kb on + strand, within GFF3821 at 7.878 kb on + strand, within GFF3821 at 7.878 kb on + strand, within GFF3821 at 7.878 kb on + strand, within GFF3821 at 7.879 kb on - strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.995 kb on + strand, within GFF3821 at 7.996 kb on - strand, within GFF3821 at 7.996 kb on - strand, within GFF3821 at 7.996 kb on - strand, within GFF3821 at 7.996 kb on - strand, within GFF3821 at 7.996 kb on - strand, within GFF3821 at 8.037 kb on + strand, within GFF3821 at 8.037 kb on + strand, within GFF3821 at 8.037 kb on + strand, within GFF3821 at 8.037 kb on + strand, within GFF3821 at 8.037 kb on + strand, within GFF3821 at 8.038 kb on - strand, within GFF3821 at 8.038 kb on - strand, within GFF3821 at 8.038 kb on - strand, within GFF3821 at 8.038 kb on - strand, within GFF3821
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,750 + GFF3819 0.27 +0.1 5,017 + GFF3819 0.47 +0.2 5,050 + GFF3819 0.50 +1.1 5,050 + GFF3819 0.50 +0.1 5,050 + GFF3819 0.50 -0.5 5,051 - GFF3819 0.50 -1.3 5,051 - GFF3819 0.50 -0.5 5,051 - GFF3819 0.50 +1.5 5,557 + GFF3819 0.89 -0.4 5,557 + GFF3819 0.89 -0.5 5,558 - GFF3819 0.89 -0.0 5,641 + -0.4 5,710 + +0.3 5,743 + +0.5 5,743 + +0.0 5,743 + +0.2 5,743 + -0.3 5,743 + -2.9 5,744 - -0.1 5,744 - -0.8 5,744 - +0.3 5,744 - -0.7 5,744 - +0.2 5,806 + +0.5 5,809 + -0.9 5,810 - -1.1 5,839 + -0.2 5,839 + +1.5 5,840 - -0.4 5,840 - -0.2 5,998 + GFF3820 0.20 +0.4 5,998 + GFF3820 0.20 +1.2 5,999 - GFF3820 0.20 -0.3 6,665 - GFF3820 0.67 +0.1 6,665 - GFF3820 0.67 +0.0 6,665 - GFF3820 0.67 +1.5 6,665 - GFF3820 0.67 +1.1 6,721 + GFF3820 0.71 +1.1 6,722 - GFF3820 0.71 -0.3 6,749 - GFF3820 0.73 +0.1 6,749 - GFF3820 0.73 -0.3 6,749 - GFF3820 0.73 -0.6 6,862 + GFF3820 0.80 -0.1 7,051 + +0.2 7,051 + -0.2 7,195 + -1.3 7,195 + +0.2 7,196 - +0.1 7,196 - +0.1 7,533 + GFF3821 0.12 -0.0 7,534 - GFF3821 0.12 -0.4 7,674 - GFF3821 0.17 +0.7 7,680 + GFF3821 0.17 -0.5 7,680 + GFF3821 0.17 +0.7 7,680 + GFF3821 0.17 -0.0 7,681 - GFF3821 0.17 -1.5 7,681 - GFF3821 0.17 +1.8 7,741 - GFF3821 0.19 -0.7 7,836 + GFF3821 0.22 +0.2 7,837 - GFF3821 0.22 -0.4 7,854 + GFF3821 0.22 -0.3 7,878 + GFF3821 0.23 -0.3 7,878 + GFF3821 0.23 +0.0 7,878 + GFF3821 0.23 +0.5 7,878 + GFF3821 0.23 -0.4 7,878 + GFF3821 0.23 -0.5 7,878 + GFF3821 0.23 +0.8 7,879 - GFF3821 0.23 +0.2 7,995 + GFF3821 0.27 +0.0 7,995 + GFF3821 0.27 -0.2 7,995 + GFF3821 0.27 +1.2 7,995 + GFF3821 0.27 -0.2 7,995 + GFF3821 0.27 +0.0 7,995 + GFF3821 0.27 -0.3 7,995 + GFF3821 0.27 -0.2 7,996 - GFF3821 0.27 -0.1 7,996 - GFF3821 0.27 -2.2 7,996 - GFF3821 0.27 -0.2 7,996 - GFF3821 0.27 +0.3 7,996 - GFF3821 0.27 -1.9 8,037 + GFF3821 0.28 -0.5 8,037 + GFF3821 0.28 +1.3 8,037 + GFF3821 0.28 -0.5 8,037 + GFF3821 0.28 -0.6 8,037 + GFF3821 0.28 +0.0 8,038 - GFF3821 0.28 +1.0 8,038 - GFF3821 0.28 -0.2 8,038 - GFF3821 0.28 +1.3 8,038 - GFF3821 0.28 -0.5
Or see this region's nucleotide sequence