Strain Fitness in Variovorax sp. SCN45 around GFF3815

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3814 and GFF3815 are separated by 15 nucleotidesGFF3815 and GFF3816 are separated by 86 nucleotidesGFF3816 and GFF3817 are separated by 28 nucleotides GFF3814 - OpgC protein, at 233 to 1,375 GFF3814 GFF3815 - FIG00347597: hypothetical protein, at 1,391 to 2,164 GFF3815 GFF3816 - hypothetical protein, at 2,251 to 3,021 GFF3816 GFF3817 - RNA polymerase sigma factor, at 3,050 to 3,643 GFF3817 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 0.398 kb on + strand, within GFF3814at 0.470 kb on + strand, within GFF3814at 0.470 kb on + strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.471 kb on - strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.566 kb on + strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.567 kb on - strand, within GFF3814at 0.569 kb on + strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.570 kb on - strand, within GFF3814at 0.600 kb on - strand, within GFF3814at 0.600 kb on - strand, within GFF3814at 0.600 kb on - strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.617 kb on + strand, within GFF3814at 0.618 kb on - strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.650 kb on + strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.651 kb on - strand, within GFF3814at 0.776 kb on + strand, within GFF3814at 0.776 kb on + strand, within GFF3814at 0.776 kb on + strand, within GFF3814at 0.794 kb on + strand, within GFF3814at 0.794 kb on + strand, within GFF3814at 0.794 kb on + strand, within GFF3814at 0.795 kb on - strand, within GFF3814at 0.795 kb on - strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.842 kb on + strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.843 kb on - strand, within GFF3814at 0.971 kb on + strand, within GFF3814at 0.971 kb on + strand, within GFF3814at 1.223 kb on + strand, within GFF3814at 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.295 kb on + strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.296 kb on - strandat 1.470 kb on + strand, within GFF3815at 1.470 kb on + strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.471 kb on - strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.508 kb on + strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.509 kb on - strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.551 kb on + strand, within GFF3815at 1.552 kb on - strand, within GFF3815at 1.552 kb on - strand, within GFF3815at 1.563 kb on + strand, within GFF3815at 1.591 kb on - strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.779 kb on + strand, within GFF3815at 1.780 kb on - strand, within GFF3815at 1.780 kb on - strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 1.803 kb on + strand, within GFF3815at 2.034 kb on + strand, within GFF3815at 2.034 kb on + strand, within GFF3815at 2.035 kb on - strand, within GFF3815at 2.035 kb on - strand, within GFF3815at 2.035 kb on - strand, within GFF3815at 2.206 kb on - strandat 2.253 kb on - strandat 2.253 kb on - strandat 2.253 kb on - strandat 2.253 kb on - strandat 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.582 kb on + strand, within GFF3816at 2.583 kb on - strand, within GFF3816at 2.583 kb on - strand, within GFF3816at 2.583 kb on - strand, within GFF3816at 2.583 kb on - strand, within GFF3816at 2.583 kb on - strand, within GFF3816at 2.903 kb on - strand, within GFF3816at 3.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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398 + GFF3814 0.14 +0.5
470 + GFF3814 0.21 +0.3
470 + GFF3814 0.21 +0.3
471 - GFF3814 0.21 -0.0
471 - GFF3814 0.21 -0.5
471 - GFF3814 0.21 -0.4
471 - GFF3814 0.21 -0.1
471 - GFF3814 0.21 -1.0
471 - GFF3814 0.21 -0.5
566 + GFF3814 0.29 -0.0
566 + GFF3814 0.29 -1.2
566 + GFF3814 0.29 +0.3
566 + GFF3814 0.29 -0.1
566 + GFF3814 0.29 -0.6
567 - GFF3814 0.29 -1.0
567 - GFF3814 0.29 -1.5
567 - GFF3814 0.29 -0.8
567 - GFF3814 0.29 -0.3
567 - GFF3814 0.29 +0.9
569 + GFF3814 0.29 -0.6
570 - GFF3814 0.29 -0.4
570 - GFF3814 0.29 -0.0
570 - GFF3814 0.29 +0.6
570 - GFF3814 0.29 -0.8
570 - GFF3814 0.29 +0.1
600 - GFF3814 0.32 -0.1
600 - GFF3814 0.32 -0.7
600 - GFF3814 0.32 -1.0
617 + GFF3814 0.34 +1.0
617 + GFF3814 0.34 +0.1
617 + GFF3814 0.34 +1.0
617 + GFF3814 0.34 -1.2
618 - GFF3814 0.34 +0.1
650 + GFF3814 0.36 +0.5
650 + GFF3814 0.36 -0.6
650 + GFF3814 0.36 -0.1
650 + GFF3814 0.36 +0.5
650 + GFF3814 0.36 -0.1
650 + GFF3814 0.36 -0.3
650 + GFF3814 0.36 -0.2
650 + GFF3814 0.36 -0.0
650 + GFF3814 0.36 -0.1
651 - GFF3814 0.37 -0.2
651 - GFF3814 0.37 -0.0
651 - GFF3814 0.37 -0.1
651 - GFF3814 0.37 -0.2
651 - GFF3814 0.37 +1.2
651 - GFF3814 0.37 -0.3
651 - GFF3814 0.37 +1.5
651 - GFF3814 0.37 +0.2
776 + GFF3814 0.48 +0.1
776 + GFF3814 0.48 +0.5
776 + GFF3814 0.48 -0.1
794 + GFF3814 0.49 +2.1
794 + GFF3814 0.49 -0.0
794 + GFF3814 0.49 -1.6
795 - GFF3814 0.49 +0.5
795 - GFF3814 0.49 +1.0
842 + GFF3814 0.53 +0.3
842 + GFF3814 0.53 +0.0
842 + GFF3814 0.53 -0.8
842 + GFF3814 0.53 -1.0
842 + GFF3814 0.53 -0.4
842 + GFF3814 0.53 -0.6
842 + GFF3814 0.53 -0.9
842 + GFF3814 0.53 -0.8
842 + GFF3814 0.53 -0.7
842 + GFF3814 0.53 +0.7
842 + GFF3814 0.53 -0.0
843 - GFF3814 0.53 -0.7
843 - GFF3814 0.53 +0.4
843 - GFF3814 0.53 -0.0
843 - GFF3814 0.53 -0.2
843 - GFF3814 0.53 -1.3
843 - GFF3814 0.53 -1.0
843 - GFF3814 0.53 -1.6
843 - GFF3814 0.53 +0.3
843 - GFF3814 0.53 +0.5
843 - GFF3814 0.53 +0.1
843 - GFF3814 0.53 +0.5
971 + GFF3814 0.65 -0.3
971 + GFF3814 0.65 -0.5
1,223 + GFF3814 0.87 +0.5
1,295 + -0.3
1,295 + +0.2
1,295 + +0.2
1,295 + -0.0
1,295 + +0.6
1,295 + -0.0
1,295 + -1.1
1,295 + -0.0
1,295 + +0.5
1,295 + -0.8
1,296 - -0.2
1,296 - -0.5
1,296 - +0.1
1,296 - -0.4
1,296 - -0.5
1,296 - +0.5
1,296 - +0.4
1,296 - +0.3
1,296 - +0.7
1,470 + GFF3815 0.10 +0.1
1,470 + GFF3815 0.10 +0.5
1,471 - GFF3815 0.10 -0.8
1,471 - GFF3815 0.10 +0.2
1,471 - GFF3815 0.10 -0.4
1,471 - GFF3815 0.10 +0.3
1,471 - GFF3815 0.10 -1.0
1,471 - GFF3815 0.10 -0.1
1,508 + GFF3815 0.15 +0.1
1,508 + GFF3815 0.15 -0.4
1,508 + GFF3815 0.15 +0.2
1,508 + GFF3815 0.15 +0.4
1,508 + GFF3815 0.15 +0.5
1,508 + GFF3815 0.15 -0.3
1,509 - GFF3815 0.15 -1.4
1,509 - GFF3815 0.15 -0.8
1,509 - GFF3815 0.15 -0.1
1,509 - GFF3815 0.15 -1.3
1,509 - GFF3815 0.15 +0.0
1,509 - GFF3815 0.15 +0.2
1,551 + GFF3815 0.21 +0.8
1,551 + GFF3815 0.21 +1.3
1,551 + GFF3815 0.21 -0.9
1,551 + GFF3815 0.21 -0.7
1,552 - GFF3815 0.21 -0.2
1,552 - GFF3815 0.21 +0.7
1,563 + GFF3815 0.22 +0.1
1,591 - GFF3815 0.26 -0.5
1,779 + GFF3815 0.50 -0.3
1,779 + GFF3815 0.50 -0.9
1,779 + GFF3815 0.50 +1.1
1,779 + GFF3815 0.50 +1.7
1,780 - GFF3815 0.50 -0.8
1,780 - GFF3815 0.50 +0.3
1,803 + GFF3815 0.53 -1.9
1,803 + GFF3815 0.53 -0.5
1,803 + GFF3815 0.53 -0.5
1,803 + GFF3815 0.53 -1.3
2,034 + GFF3815 0.83 -0.1
2,034 + GFF3815 0.83 -0.0
2,035 - GFF3815 0.83 -0.1
2,035 - GFF3815 0.83 +0.7
2,035 - GFF3815 0.83 +0.5
2,206 - -0.6
2,253 - +0.1
2,253 - -1.3
2,253 - -0.5
2,253 - -0.4
2,582 + GFF3816 0.43 +0.1
2,582 + GFF3816 0.43 -0.6
2,582 + GFF3816 0.43 -0.0
2,582 + GFF3816 0.43 +0.1
2,582 + GFF3816 0.43 +0.9
2,582 + GFF3816 0.43 +2.1
2,582 + GFF3816 0.43 -1.0
2,582 + GFF3816 0.43 -1.0
2,582 + GFF3816 0.43 -0.0
2,582 + GFF3816 0.43 +0.0
2,582 + GFF3816 0.43 -1.0
2,582 + GFF3816 0.43 -0.3
2,582 + GFF3816 0.43 +2.0
2,583 - GFF3816 0.43 -1.4
2,583 - GFF3816 0.43 -1.1
2,583 - GFF3816 0.43 -0.3
2,583 - GFF3816 0.43 -0.3
2,583 - GFF3816 0.43 -0.1
2,903 - GFF3816 0.85 -0.5
3,021 + -1.3

Or see this region's nucleotide sequence