Strain Fitness in Variovorax sp. SCN45 around GFF3730

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3728 and GFF3729 are separated by 27 nucleotidesGFF3729 and GFF3730 are separated by 119 nucleotidesGFF3730 and GFF3731 are separated by 76 nucleotidesGFF3731 and GFF3732 are separated by 11 nucleotides GFF3728 - no description, at 227,330 to 227,557 GFF3728 GFF3729 - Transcriptional regulator, AraC family, at 227,585 to 228,352 GFF3729 GFF3730 - Integral membrane protein, at 228,472 to 229,290 GFF3730 GFF3731 - Glutathione S-transferase, at 229,367 to 230,095 GFF3731 GFF3732 - hypothetical protein, at 230,107 to 230,604 GFF3732 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2 3at 227.661 kb on + strandat 227.661 kb on + strandat 227.661 kb on + strandat 227.991 kb on + strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 228.099 kb on + strand, within GFF3729at 228.099 kb on + strand, within GFF3729at 228.231 kb on + strand, within GFF3729at 228.231 kb on + strand, within GFF3729at 228.296 kb on + strandat 228.296 kb on + strandat 228.297 kb on - strandat 228.393 kb on + strandat 228.393 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.823 kb on + strand, within GFF3730at 228.824 kb on - strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.244 kb on - strandat 229.373 kb on + strandat 229.373 kb on + strandat 229.385 kb on + strandat 229.385 kb on + strandat 229.451 kb on + strand, within GFF3731at 229.451 kb on + strand, within GFF3731at 229.451 kb on + strand, within GFF3731at 229.452 kb on - strand, within GFF3731at 229.607 kb on + strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.742 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 230.021 kb on + strand, within GFF3731at 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.094 kb on - strandat 230.195 kb on + strand, within GFF3732at 230.195 kb on + strand, within GFF3732

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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227,661 + -0.6
227,661 + +3.1
227,661 + -0.7
227,991 + GFF3729 0.53 +0.6
227,992 - GFF3729 0.53 +2.1
227,992 - GFF3729 0.53 -0.3
227,992 - GFF3729 0.53 -0.6
228,099 + GFF3729 0.67 -0.7
228,099 + GFF3729 0.67 +0.2
228,231 + GFF3729 0.84 -0.3
228,231 + GFF3729 0.84 -0.5
228,296 + -0.4
228,296 + -1.0
228,297 - -0.1
228,393 + -1.4
228,393 + +0.5
228,433 + +0.1
228,433 + +0.1
228,433 + +0.6
228,433 + -0.3
228,433 + -0.4
228,433 + -0.8
228,434 - -1.1
228,434 - -0.4
228,434 - -0.1
228,434 - -1.2
228,434 - -0.3
228,434 - +0.1
228,481 + -0.0
228,481 + +0.5
228,481 + +0.0
228,481 + +0.1
228,481 + -1.5
228,481 + -0.8
228,481 + +0.3
228,481 + -0.0
228,482 - +0.3
228,482 - -0.4
228,482 - -0.6
228,482 - +0.4
228,482 - +0.0
228,482 - +0.8
228,823 + GFF3730 0.43 +0.1
228,824 - GFF3730 0.43 -1.3
229,081 + GFF3730 0.74 +0.1
229,081 + GFF3730 0.74 +0.1
229,081 + GFF3730 0.74 -1.1
229,081 + GFF3730 0.74 +0.8
229,081 + GFF3730 0.74 -0.9
229,082 - GFF3730 0.74 +0.3
229,082 - GFF3730 0.74 -0.7
229,082 - GFF3730 0.74 +0.7
229,082 - GFF3730 0.74 -2.3
229,082 - GFF3730 0.74 +0.3
229,082 - GFF3730 0.74 +0.1
229,082 - GFF3730 0.74 +1.4
229,082 - GFF3730 0.74 -1.3
229,082 - GFF3730 0.74 +0.0
229,082 - GFF3730 0.74 -0.8
229,244 - +0.5
229,373 + -0.3
229,373 + -0.7
229,385 + -0.3
229,385 + -0.1
229,451 + GFF3731 0.12 +0.7
229,451 + GFF3731 0.12 +0.6
229,451 + GFF3731 0.12 -2.0
229,452 - GFF3731 0.12 +0.1
229,607 + GFF3731 0.33 -0.4
229,608 - GFF3731 0.33 +0.1
229,608 - GFF3731 0.33 -0.9
229,608 - GFF3731 0.33 -0.7
229,608 - GFF3731 0.33 -0.2
229,742 + GFF3731 0.51 +0.2
229,883 + GFF3731 0.71 -1.1
229,883 + GFF3731 0.71 -0.4
229,883 + GFF3731 0.71 +0.2
229,883 + GFF3731 0.71 +0.3
229,883 + GFF3731 0.71 +0.3
229,883 + GFF3731 0.71 -1.4
229,883 + GFF3731 0.71 -0.5
229,884 - GFF3731 0.71 +0.4
229,884 - GFF3731 0.71 -0.8
229,884 - GFF3731 0.71 +0.4
229,884 - GFF3731 0.71 -0.7
230,021 + GFF3731 0.90 +1.1
230,075 + -0.1
230,075 + +1.0
230,075 + +0.4
230,094 - -0.1
230,195 + GFF3732 0.18 +0.1
230,195 + GFF3732 0.18 -0.4

Or see this region's nucleotide sequence