Strain Fitness in Variovorax sp. SCN45 around GFF3724

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3722 and GFF3723 are separated by 48 nucleotidesGFF3723 and GFF3724 are separated by 124 nucleotidesGFF3724 and GFF3725 overlap by 8 nucleotides GFF3722 - FIG00931152: hypothetical protein, at 219,022 to 219,582 GFF3722 GFF3723 - Cytochrome c5, at 219,631 to 220,320 GFF3723 GFF3724 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 220,445 to 221,872 GFF3724 GFF3725 - RND efflux system, inner membrane transporter, at 221,865 to 225,029 GFF3725 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1at 219.620 kb on - strandat 219.620 kb on - strandat 219.624 kb on + strandat 219.625 kb on - strandat 219.632 kb on + strandat 219.632 kb on + strandat 219.633 kb on - strandat 219.633 kb on - strandat 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.821 kb on + strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.822 kb on - strand, within GFF3723at 219.921 kb on - strand, within GFF3723at 219.921 kb on - strand, within GFF3723at 219.921 kb on - strand, within GFF3723at 220.130 kb on + strand, within GFF3723at 220.131 kb on - strand, within GFF3723at 220.131 kb on - strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.187 kb on + strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.188 kb on - strand, within GFF3723at 220.301 kb on + strandat 220.301 kb on + strandat 220.302 kb on - strandat 220.302 kb on - strandat 220.376 kb on + strandat 220.377 kb on - strandat 220.377 kb on - strandat 220.377 kb on - strandat 220.377 kb on - strandat 220.378 kb on + strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.379 kb on - strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.413 kb on - strandat 220.413 kb on - strandat 220.413 kb on - strandat 220.418 kb on + strandat 220.494 kb on + strandat 220.494 kb on + strandat 220.494 kb on + strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.495 kb on - strandat 220.750 kb on - strand, within GFF3724at 221.173 kb on - strand, within GFF3724at 221.214 kb on + strand, within GFF3724at 221.215 kb on - strand, within GFF3724at 221.403 kb on + strand, within GFF3724at 221.403 kb on + strand, within GFF3724at 221.404 kb on - strand, within GFF3724at 221.487 kb on + strand, within GFF3724at 221.487 kb on + strand, within GFF3724at 221.488 kb on - strand, within GFF3724at 221.488 kb on - strand, within GFF3724at 221.488 kb on - strand, within GFF3724at 221.623 kb on - strand, within GFF3724at 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.800 kb on - strandat 221.800 kb on - strandat 221.866 kb on + strandat 221.866 kb on + strandat 221.866 kb on + strandat 221.867 kb on - strandat 221.867 kb on - strandat 221.867 kb on - strandat 221.888 kb on + strandat 222.265 kb on + strand, within GFF3725at 222.265 kb on + strand, within GFF3725at 222.266 kb on - strand, within GFF3725at 222.281 kb on - strand, within GFF3725at 222.281 kb on - strand, within GFF3725at 222.368 kb on - strand, within GFF3725at 222.368 kb on - strand, within GFF3725at 222.412 kb on + strand, within GFF3725at 222.539 kb on - strand, within GFF3725at 222.577 kb on + strand, within GFF3725at 222.587 kb on - strand, within GFF3725at 222.587 kb on - strand, within GFF3725at 222.723 kb on + strand, within GFF3725at 222.723 kb on + strand, within GFF3725at 222.724 kb on - strand, within GFF3725at 222.724 kb on - strand, within GFF3725at 222.724 kb on - strand, within GFF3725at 222.769 kb on + strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 222.770 kb on - strand, within GFF3725

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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219,620 - -0.1
219,620 - -0.4
219,624 + +0.2
219,625 - +0.1
219,632 + +1.0
219,632 + -0.2
219,633 - +0.2
219,633 - +0.5
219,821 + GFF3723 0.28 -0.3
219,821 + GFF3723 0.28 -0.1
219,821 + GFF3723 0.28 +0.4
219,821 + GFF3723 0.28 +0.7
219,821 + GFF3723 0.28 +0.2
219,821 + GFF3723 0.28 -0.4
219,821 + GFF3723 0.28 -1.3
219,821 + GFF3723 0.28 +0.1
219,822 - GFF3723 0.28 -0.7
219,822 - GFF3723 0.28 +0.7
219,822 - GFF3723 0.28 -0.5
219,822 - GFF3723 0.28 -0.2
219,822 - GFF3723 0.28 -0.1
219,921 - GFF3723 0.42 -0.3
219,921 - GFF3723 0.42 -0.7
219,921 - GFF3723 0.42 -0.3
220,130 + GFF3723 0.72 -0.1
220,131 - GFF3723 0.72 -1.1
220,131 - GFF3723 0.72 -0.7
220,187 + GFF3723 0.81 +0.0
220,187 + GFF3723 0.81 +0.5
220,187 + GFF3723 0.81 +0.1
220,187 + GFF3723 0.81 -0.4
220,187 + GFF3723 0.81 -0.1
220,187 + GFF3723 0.81 +0.2
220,187 + GFF3723 0.81 -0.3
220,187 + GFF3723 0.81 -0.6
220,187 + GFF3723 0.81 -0.3
220,187 + GFF3723 0.81 +0.5
220,188 - GFF3723 0.81 -0.2
220,188 - GFF3723 0.81 +0.4
220,188 - GFF3723 0.81 -0.1
220,188 - GFF3723 0.81 -0.1
220,188 - GFF3723 0.81 +0.5
220,188 - GFF3723 0.81 -0.3
220,188 - GFF3723 0.81 +0.3
220,188 - GFF3723 0.81 -0.6
220,301 + -1.4
220,301 + +0.1
220,302 - -0.4
220,302 - +0.7
220,376 + +0.7
220,377 - +0.1
220,377 - -0.5
220,377 - -0.3
220,377 - +1.0
220,378 + -1.2
220,379 - -0.9
220,379 - +1.1
220,379 - +0.3
220,379 - +0.7
220,379 - -1.2
220,412 + -0.1
220,412 + -0.1
220,412 + +0.0
220,412 + -0.8
220,412 + -0.7
220,412 + -0.4
220,412 + -1.9
220,412 + +0.1
220,412 + -0.3
220,413 - -0.0
220,413 - -0.3
220,413 - -0.1
220,418 + -0.5
220,494 + -1.6
220,494 + -0.3
220,494 + -1.1
220,495 - +0.1
220,495 - -0.9
220,495 - -0.2
220,495 - -0.2
220,495 - -0.1
220,750 - GFF3724 0.21 -0.6
221,173 - GFF3724 0.51 +1.0
221,214 + GFF3724 0.54 -0.6
221,215 - GFF3724 0.54 +0.8
221,403 + GFF3724 0.67 -1.2
221,403 + GFF3724 0.67 +0.3
221,404 - GFF3724 0.67 -0.6
221,487 + GFF3724 0.73 -0.1
221,487 + GFF3724 0.73 -0.3
221,488 - GFF3724 0.73 +0.7
221,488 - GFF3724 0.73 +0.5
221,488 - GFF3724 0.73 +0.0
221,623 - GFF3724 0.82 +0.1
221,799 + -0.4
221,799 + -0.1
221,799 + -0.7
221,799 + -0.4
221,799 + -0.0
221,799 + -0.6
221,799 + -0.9
221,800 - -0.5
221,800 - -0.9
221,866 + -0.6
221,866 + -0.9
221,866 + +0.1
221,867 - -0.2
221,867 - -0.7
221,867 - -2.1
221,888 + -0.3
222,265 + GFF3725 0.13 -0.8
222,265 + GFF3725 0.13 -1.6
222,266 - GFF3725 0.13 +0.6
222,281 - GFF3725 0.13 -0.8
222,281 - GFF3725 0.13 +0.1
222,368 - GFF3725 0.16 -0.3
222,368 - GFF3725 0.16 -0.3
222,412 + GFF3725 0.17 -0.1
222,539 - GFF3725 0.21 -0.1
222,577 + GFF3725 0.22 +0.3
222,587 - GFF3725 0.23 -0.1
222,587 - GFF3725 0.23 -0.0
222,723 + GFF3725 0.27 -1.5
222,723 + GFF3725 0.27 -0.6
222,724 - GFF3725 0.27 -0.1
222,724 - GFF3725 0.27 -0.9
222,724 - GFF3725 0.27 +0.7
222,769 + GFF3725 0.29 +0.1
222,770 - GFF3725 0.29 +0.9
222,770 - GFF3725 0.29 -0.3
222,770 - GFF3725 0.29 +0.5
222,770 - GFF3725 0.29 +0.1

Or see this region's nucleotide sequence