Strain Fitness in Variovorax sp. SCN45 around GFF3719

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3717 and GFF3718 are separated by 20 nucleotidesGFF3718 and GFF3719 are separated by 14 nucleotidesGFF3719 and GFF3720 are separated by 217 nucleotidesGFF3720 and GFF3721 are separated by 66 nucleotides GFF3717 - Putative aminoacrylate peracid reductase RutC @ RidA/YER057c/UK114 superfamily protein, at 214,957 to 215,349 GFF3717 GFF3718 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB (EC 3.5.1.110), at 215,370 to 216,161 GFF3718 GFF3719 - Pyrimidine monooxygenase RutA (EC 1.14.99.46), at 216,176 to 217,288 GFF3719 GFF3720 - Alternative dihydrofolate reductase 3, at 217,506 to 217,958 GFF3720 GFF3721 - Hydrolase, alpha/beta fold family, at 218,025 to 219,002 GFF3721 Position (kb) 216 217 218Strain fitness (log2 ratio) -2 -1 0 1at 215.264 kb on + strand, within GFF3717at 215.264 kb on + strand, within GFF3717at 215.264 kb on + strand, within GFF3717at 215.264 kb on + strand, within GFF3717at 215.265 kb on - strand, within GFF3717at 215.265 kb on - strand, within GFF3717at 215.265 kb on - strand, within GFF3717at 215.297 kb on + strand, within GFF3717at 215.297 kb on + strand, within GFF3717at 215.298 kb on - strand, within GFF3717at 215.479 kb on + strand, within GFF3718at 215.480 kb on - strand, within GFF3718at 215.480 kb on - strand, within GFF3718at 215.549 kb on - strand, within GFF3718at 215.625 kb on + strand, within GFF3718at 215.677 kb on + strand, within GFF3718at 215.678 kb on - strand, within GFF3718at 215.851 kb on + strand, within GFF3718at 215.852 kb on - strand, within GFF3718at 215.852 kb on - strand, within GFF3718at 215.980 kb on + strand, within GFF3718at 215.980 kb on + strand, within GFF3718at 215.981 kb on - strand, within GFF3718at 215.981 kb on - strand, within GFF3718at 215.998 kb on + strand, within GFF3718at 216.366 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.514 kb on - strand, within GFF3719at 216.514 kb on - strand, within GFF3719at 216.514 kb on - strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.681 kb on + strand, within GFF3719at 216.681 kb on + strand, within GFF3719at 216.690 kb on + strand, within GFF3719at 216.691 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.861 kb on + strand, within GFF3719at 216.862 kb on - strand, within GFF3719at 216.862 kb on - strand, within GFF3719at 216.916 kb on - strand, within GFF3719at 217.221 kb on + strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.346 kb on - strandat 217.355 kb on + strandat 217.368 kb on + strandat 217.369 kb on - strandat 217.369 kb on - strandat 217.372 kb on - strandat 217.575 kb on + strand, within GFF3720at 217.575 kb on + strand, within GFF3720at 217.575 kb on + strand, within GFF3720at 217.575 kb on + strand, within GFF3720at 217.576 kb on - strand, within GFF3720at 217.576 kb on - strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.649 kb on - strand, within GFF3720at 217.854 kb on + strand, within GFF3720at 217.854 kb on + strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 218.031 kb on + strandat 218.088 kb on + strandat 218.088 kb on + strandat 218.088 kb on + strandat 218.089 kb on - strandat 218.247 kb on + strand, within GFF3721at 218.247 kb on + strand, within GFF3721at 218.247 kb on + strand, within GFF3721at 218.247 kb on + strand, within GFF3721at 218.248 kb on - strand, within GFF3721

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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215,264 + GFF3717 0.78 -0.7
215,264 + GFF3717 0.78 +0.3
215,264 + GFF3717 0.78 -0.0
215,264 + GFF3717 0.78 -0.3
215,265 - GFF3717 0.78 +0.2
215,265 - GFF3717 0.78 -0.4
215,265 - GFF3717 0.78 -0.9
215,297 + GFF3717 0.87 +1.7
215,297 + GFF3717 0.87 -1.4
215,298 - GFF3717 0.87 -0.0
215,479 + GFF3718 0.14 +0.5
215,480 - GFF3718 0.14 -1.0
215,480 - GFF3718 0.14 -0.1
215,549 - GFF3718 0.23 -0.9
215,625 + GFF3718 0.32 +0.4
215,677 + GFF3718 0.39 +0.2
215,678 - GFF3718 0.39 +0.8
215,851 + GFF3718 0.61 -1.0
215,852 - GFF3718 0.61 +1.1
215,852 - GFF3718 0.61 -0.9
215,980 + GFF3718 0.77 -0.4
215,980 + GFF3718 0.77 +0.2
215,981 - GFF3718 0.77 +1.1
215,981 - GFF3718 0.77 -0.5
215,998 + GFF3718 0.79 -0.4
216,366 + GFF3719 0.17 +1.1
216,513 + GFF3719 0.30 -0.5
216,513 + GFF3719 0.30 -0.6
216,513 + GFF3719 0.30 +0.4
216,513 + GFF3719 0.30 -0.8
216,513 + GFF3719 0.30 -0.1
216,513 + GFF3719 0.30 +0.4
216,513 + GFF3719 0.30 +0.3
216,513 + GFF3719 0.30 -0.3
216,513 + GFF3719 0.30 -0.0
216,513 + GFF3719 0.30 -1.1
216,514 - GFF3719 0.30 -1.2
216,514 - GFF3719 0.30 -0.2
216,514 - GFF3719 0.30 -0.0
216,576 + GFF3719 0.36 -0.0
216,576 + GFF3719 0.36 -0.6
216,576 + GFF3719 0.36 -0.4
216,576 + GFF3719 0.36 -0.4
216,576 + GFF3719 0.36 -0.5
216,576 + GFF3719 0.36 -0.1
216,576 + GFF3719 0.36 -0.2
216,577 - GFF3719 0.36 -0.6
216,577 - GFF3719 0.36 +0.5
216,577 - GFF3719 0.36 -0.2
216,577 - GFF3719 0.36 -0.2
216,577 - GFF3719 0.36 -0.3
216,681 + GFF3719 0.45 -0.9
216,681 + GFF3719 0.45 -1.9
216,690 + GFF3719 0.46 -0.3
216,691 - GFF3719 0.46 -0.3
216,850 - GFF3719 0.61 +0.1
216,850 - GFF3719 0.61 -0.3
216,850 - GFF3719 0.61 -0.9
216,850 - GFF3719 0.61 -0.5
216,861 + GFF3719 0.62 -0.3
216,862 - GFF3719 0.62 -0.9
216,862 - GFF3719 0.62 -0.8
216,916 - GFF3719 0.66 +0.7
217,221 + +1.1
217,222 - +0.0
217,222 - -0.3
217,222 - -0.2
217,222 - -0.5
217,222 - -0.3
217,346 - -0.9
217,355 + -0.8
217,368 + -0.4
217,369 - -1.1
217,369 - -0.9
217,372 - -0.9
217,575 + GFF3720 0.15 -1.4
217,575 + GFF3720 0.15 -0.3
217,575 + GFF3720 0.15 +0.3
217,575 + GFF3720 0.15 +0.1
217,576 - GFF3720 0.15 -1.3
217,576 - GFF3720 0.15 -0.9
217,648 + GFF3720 0.31 +0.9
217,648 + GFF3720 0.31 +0.7
217,648 + GFF3720 0.31 -1.0
217,648 + GFF3720 0.31 -0.2
217,649 - GFF3720 0.32 +0.3
217,854 + GFF3720 0.77 +0.1
217,854 + GFF3720 0.77 -0.6
217,855 - GFF3720 0.77 -0.5
217,855 - GFF3720 0.77 -0.3
217,855 - GFF3720 0.77 +0.4
217,855 - GFF3720 0.77 -0.2
217,855 - GFF3720 0.77 -0.0
218,031 + -0.1
218,088 + -0.6
218,088 + +0.5
218,088 + +0.4
218,089 - +1.4
218,247 + GFF3721 0.23 +0.3
218,247 + GFF3721 0.23 -0.4
218,247 + GFF3721 0.23 -0.2
218,247 + GFF3721 0.23 +0.1
218,248 - GFF3721 0.23 -0.1

Or see this region's nucleotide sequence