Strain Fitness in Variovorax sp. SCN45 around GFF3592

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
102,571	+		GFF3591	0.34	-0.3
102,571	+		GFF3591	0.34	-0.7
102,572	-		GFF3591	0.34	-0.7
102,572	-		GFF3591	0.34	-0.0
102,935	-		GFF3591	0.61	-0.3
103,168	+		GFF3591	0.78	-0.8
103,168	+		GFF3591	0.78	+0.1
103,168	+		GFF3591	0.78	+3.3
103,168	+		GFF3591	0.78	+0.4
103,168	+		GFF3591	0.78	+0.5
103,169	+		GFF3591	0.78	-0.3
103,169	-		GFF3591	0.78	-0.4
103,169	-		GFF3591	0.78	+0.2
103,169	-		GFF3591	0.78	-0.9
103,169	-		GFF3591	0.78	+0.7
103,169	-		GFF3591	0.78	-0.0
103,169	-		GFF3591	0.78	+0.2
103,169	-		GFF3591	0.78	-0.8
103,169	-		GFF3591	0.78	+0.3
103,258	+		GFF3591	0.85	-0.4
103,259	-		GFF3591	0.85	+0.4
103,300	+		GFF3591	0.88	+1.0
103,300	+		GFF3591	0.88	-0.3
103,300	+		GFF3591	0.88	-0.8
103,300	+		GFF3591	0.88	+2.0
103,300	+		GFF3591	0.88	-0.4
103,300	+		GFF3591	0.88	-1.1
103,300	+		GFF3591	0.88	+0.2
103,301	-		GFF3591	0.88	-1.1
103,301	-		GFF3591	0.88	-0.3
103,306	+		GFF3591	0.88	-0.3
103,306	+		GFF3591	0.88	-0.2
103,306	+		GFF3591	0.88	-0.1
103,307	-		GFF3591	0.88	-0.7
103,320	+		GFF3591	0.89	-1.0
103,321	-		GFF3591	0.89	-1.3
103,321	-		GFF3591	0.89	+0.2
104,120	+		GFF3592	0.44	+0.4
104,120	+		GFF3592	0.44	-0.4
104,120	+		GFF3592	0.44	+0.6
104,184	-		GFF3592	0.49	+0.0
104,345	+		GFF3592	0.61	-0.0
104,346	-		GFF3592	0.61	-0.3
104,346	-		GFF3592	0.61	+0.2
104,346	-		GFF3592	0.61	-0.7
104,346	-		GFF3592	0.61	+0.7
104,601	+		GFF3592	0.80	-0.4
104,601	+		GFF3592	0.80	+0.4
104,602	-		GFF3592	0.81	+0.2
104,602	-		GFF3592	0.81	+0.4
104,602	-		GFF3592	0.81	-0.1
104,603	+		GFF3592	0.81	-0.9
104,603	+		GFF3592	0.81	-0.4
104,603	+		GFF3592	0.81	-0.6
104,603	+		GFF3592	0.81	-0.1
104,603	+		GFF3592	0.81	+0.0
104,603	+		GFF3592	0.81	+0.4
104,603	+		GFF3592	0.81	-1.7
104,603	+		GFF3592	0.81	+0.9
104,604	-		GFF3592	0.81	-0.1
104,604	-		GFF3592	0.81	+0.7
104,604	-		GFF3592	0.81	+0.4
104,604	-		GFF3592	0.81	-1.0
104,604	-		GFF3592	0.81	-0.0
104,604	-		GFF3592	0.81	+0.3
104,604	-		GFF3592	0.81	-0.2
104,604	-		GFF3592	0.81	-0.6
104,880	+				+2.3
104,880	+				-0.3
104,880	+				+1.0
104,880	+				-0.2
104,880	+				-0.0
104,880	+				-0.6
104,880	+				+0.5
104,880	+				+0.4
104,880	+				+1.0
104,880	+				-0.2
104,880	+				-0.6
104,880	+				+0.4
104,880	+				-0.3
104,881	-				-0.7
104,881	-				+0.0
104,881	-				-0.1
104,881	-				+1.3
104,881	-				+1.3
104,881	-				-0.3
104,881	-				-0.6
104,881	-				-1.9
104,881	-				-0.4
104,881	-				+0.1
104,881	-				+0.1
104,881	-				-1.1
104,881	-				-0.7
104,881	-				+0.3
104,881	-				-0.8
104,881	-				-0.7
104,881	-				-0.1
104,881	-				+0.1
104,881	-				-0.1
104,915	+				+0.9
104,916	-				-0.1
104,916	-				+0.9
104,993	+				+1.7
104,994	-				+0.2
104,994	-				-1.2
104,994	-				-0.2
104,994	-				-0.3
104,994	-				-0.4
104,994	-				+1.7
105,141	+				+0.7
105,141	+				+0.5
105,141	+				+1.5
105,141	+				-0.7
105,141	+				-1.3
105,141	+				+0.4
105,141	+				-0.2
105,141	+				-1.6
105,141	+				+0.1
105,142	-				+0.3
105,142	-				-0.1
105,142	-				+1.7
105,142	-				-0.2
105,142	-				-0.6
105,142	-				+0.3
105,142	-				+0.2
105,142	-				+1.4
105,144	+				-0.0
105,144	+				+0.2
105,144	+				+0.9
105,144	+				-0.4
105,144	+				+0.6
105,145	-				-0.2
105,145	-				+0.3
105,145	-				-0.3
105,145	-				+0.3
105,255	+		GFF3593	0.12	-0.1
105,255	+		GFF3593	0.12	+0.0
105,256	-		GFF3593	0.12	-0.6
105,256	-		GFF3593	0.12	-0.1
105,256	-		GFF3593	0.12	-0.0
105,333	+		GFF3593	0.16	+0.1
105,333	+		GFF3593	0.16	-1.0
105,333	+		GFF3593	0.16	+0.7
105,333	+		GFF3593	0.16	+0.5
105,333	+		GFF3593	0.16	-1.5
105,333	+		GFF3593	0.16	+1.3
105,333	+		GFF3593	0.16	+1.4
105,333	+		GFF3593	0.16	+0.2
105,333	+		GFF3593	0.16	-0.4
105,333	+		GFF3593	0.16	+0.3
105,334	-		GFF3593	0.16	-0.2
105,334	-		GFF3593	0.16	-0.3
105,334	-		GFF3593	0.16	+0.3
105,334	-		GFF3593	0.16	-0.9
105,334	-		GFF3593	0.16	+0.0
105,334	-		GFF3593	0.16	-0.5
105,334	-		GFF3593	0.16	+0.6
105,334	-		GFF3593	0.16	+0.5
105,334	-		GFF3593	0.16	-0.1
105,334	-		GFF3593	0.16	+0.5
105,334	-		GFF3593	0.16	-1.0
105,336	+		GFF3593	0.16	-0.6
105,336	+		GFF3593	0.16	-0.5
105,336	+		GFF3593	0.16	+0.2
105,337	-		GFF3593	0.16	-1.0
105,337	-		GFF3593	0.16	+0.1
105,337	-		GFF3593	0.16	-0.2
105,429	+		GFF3593	0.21	-0.4
105,429	+		GFF3593	0.21	-0.3
105,429	+		GFF3593	0.21	-1.1
105,429	+		GFF3593	0.21	+0.2
105,429	+		GFF3593	0.21	-0.6
105,429	+		GFF3593	0.21	-0.5
105,430	-		GFF3593	0.21	-0.0
105,498	+		GFF3593	0.24	+0.7
105,498	+		GFF3593	0.24	-0.9
105,498	+		GFF3593	0.24	-1.1
105,499	-		GFF3593	0.24	+0.1
105,499	-		GFF3593	0.24	-0.1
105,499	-		GFF3593	0.24	+0.4
105,559	+		GFF3593	0.27	+0.3
105,642	+		GFF3593	0.31	-0.4
105,642	+		GFF3593	0.31	-1.3
105,642	+		GFF3593	0.31	+0.7
105,642	+		GFF3593	0.31	+0.0
105,643	-		GFF3593	0.31	-0.1
105,643	-		GFF3593	0.31	-0.1
105,643	-		GFF3593	0.31	-0.7
105,643	-		GFF3593	0.31	-0.3
105,643	-		GFF3593	0.31	+0.9
105,646	+		GFF3593	0.31	-0.2
105,646	+		GFF3593	0.31	+0.2
105,646	+		GFF3593	0.31	+1.4
105,646	+		GFF3593	0.31	-0.2
105,646	+		GFF3593	0.31	-0.4
105,646	+		GFF3593	0.31	-0.6
105,646	+		GFF3593	0.31	-0.6
105,646	+		GFF3593	0.31	-0.3
105,647	-		GFF3593	0.31	-0.8
105,647	-		GFF3593	0.31	-0.1
105,647	-		GFF3593	0.31	-0.6
105,647	-		GFF3593	0.31	+0.0
105,647	-		GFF3593	0.31	-0.2
105,647	-		GFF3593	0.31	-0.7
105,647	-		GFF3593	0.31	+0.2
105,647	-		GFF3593	0.31	-0.2
105,647	-		GFF3593	0.31	-0.0
105,678	+		GFF3593	0.33	+1.3
105,678	+		GFF3593	0.33	+0.4
105,678	+		GFF3593	0.33	+1.2
105,678	+		GFF3593	0.33	-0.8
105,678	+		GFF3593	0.33	+1.0
105,678	+		GFF3593	0.33	+0.2
105,678	+		GFF3593	0.33	+0.0
105,678	+		GFF3593	0.33	-0.0
105,678	+		GFF3593	0.33	-0.4
105,678	+		GFF3593	0.33	-0.5
105,679	-		GFF3593	0.33	+0.3
105,679	-		GFF3593	0.33	-0.3
105,679	-		GFF3593	0.33	+0.3
105,679	-		GFF3593	0.33	-0.1
105,679	-		GFF3593	0.33	-0.1
105,679	-		GFF3593	0.33	-0.2
105,679	-		GFF3593	0.33	-1.5
105,679	-		GFF3593	0.33	+0.7
105,679	-		GFF3593	0.33	+0.2
105,679	-		GFF3593	0.33	-0.1
105,680	+		GFF3593	0.33	-2.5
105,680	+		GFF3593	0.33	-0.3
105,680	+		GFF3593	0.33	+0.2
105,680	+		GFF3593	0.33	-0.7
105,680	+		GFF3593	0.33	-0.1
105,680	+		GFF3593	0.33	-0.7
105,680	+		GFF3593	0.33	+0.6
105,680	+		GFF3593	0.33	+0.4
105,681	-		GFF3593	0.33	-1.0
105,681	-		GFF3593	0.33	-0.7
105,681	-		GFF3593	0.33	-2.4
105,681	-		GFF3593	0.33	+0.5
105,681	-		GFF3593	0.33	-0.1