Strain Fitness in Variovorax sp. SCN45 around GFF3546

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
50,728	+		GFF3545	0.71	-1.0
50,728	+		GFF3545	0.71	-0.7
50,728	+		GFF3545	0.71	+1.7
50,728	+		GFF3545	0.71	-0.1
50,728	+		GFF3545	0.71	+0.1
50,728	+		GFF3545	0.71	+0.3
50,729	-		GFF3545	0.71	+0.1
50,729	-		GFF3545	0.71	-0.1
50,729	-		GFF3545	0.71	+1.2
50,729	-		GFF3545	0.71	-0.3
50,729	-		GFF3545	0.71	+0.9
50,729	-		GFF3545	0.71	-1.2
50,761	+		GFF3545	0.72	-0.4
50,761	+		GFF3545	0.72	-0.8
50,761	+		GFF3545	0.72	+1.1
50,761	+		GFF3545	0.72	+0.3
50,761	+		GFF3545	0.72	-0.1
50,761	+		GFF3545	0.72	-0.1
50,761	+		GFF3545	0.72	+1.0
50,761	+		GFF3545	0.72	-1.1
50,761	+		GFF3545	0.72	+0.9
50,761	+		GFF3545	0.72	+0.5
50,761	+		GFF3545	0.72	+1.0
50,761	+		GFF3545	0.72	-0.8
50,762	-		GFF3545	0.72	-1.1
50,762	-		GFF3545	0.72	-0.4
50,762	-		GFF3545	0.72	-0.9
50,762	-		GFF3545	0.72	-0.3
50,762	-		GFF3545	0.72	-0.8
50,762	-		GFF3545	0.72	+1.4
50,762	-		GFF3545	0.72	-0.5
50,762	-		GFF3545	0.72	+0.5
50,762	-		GFF3545	0.72	-0.8
50,762	-		GFF3545	0.72	+1.7
50,762	-		GFF3545	0.72	+0.2
50,857	+		GFF3545	0.76	-0.1
50,857	+		GFF3545	0.76	-0.7
50,857	+		GFF3545	0.76	+0.2
50,857	+		GFF3545	0.76	-0.2
50,857	+		GFF3545	0.76	+0.5
50,858	-		GFF3545	0.76	-0.5
50,858	-		GFF3545	0.76	-0.4
50,941	+		GFF3545	0.80	+0.7
50,942	-		GFF3545	0.80	-1.0
50,942	-		GFF3545	0.80	+0.2
50,942	-		GFF3545	0.80	-0.6
50,942	-		GFF3545	0.80	-0.6
50,942	-		GFF3545	0.80	-0.3
50,948	-		GFF3545	0.80	-0.8
51,136	+		GFF3545	0.88	+0.7
51,136	+		GFF3545	0.88	-0.2
51,136	+		GFF3545	0.88	+0.1
51,464	+				-1.0
51,464	+				-0.4
51,464	+				+1.0
51,465	-				-1.4
51,465	-				-0.2
51,465	-				-0.4
51,482	+				-0.3
51,482	+				-0.7
51,482	+				+0.0
51,482	+				+0.9
51,482	+				-0.2
51,482	+				-0.5
51,482	+				-1.0
51,482	+				-0.7
51,482	+				-0.0
51,483	-				+0.5
51,483	-				-0.8
51,483	-				-1.4
51,483	-				-0.6
51,483	-				+0.4
51,483	-				-1.3
51,483	-				-0.7
51,483	-				-0.6
51,568	+		GFF3547	0.18	-1.3
51,568	+		GFF3547	0.18	-0.3
51,568	+		GFF3547	0.18	-1.1
51,568	+		GFF3547	0.18	-0.2
51,568	+		GFF3547	0.18	-0.4
51,569	-		GFF3547	0.19	-0.4
51,673	+				+1.0
51,674	-				-0.3
51,703	+				-0.5
51,704	-				-0.2
51,704	-				-0.8
51,726	-				-1.3
51,765	-				+0.6
51,776	+				+0.7
51,860	+				-1.9
51,860	+				+0.7
51,860	+				-2.0
51,860	+				-0.2
51,861	-				-0.7
51,861	-				+0.0
51,861	-				+0.7
51,861	-				-1.0
51,861	-				-0.5
51,861	-				-0.8
51,861	-				-1.3
51,998	+		GFF3546	0.15	-0.1
52,073	+		GFF3546	0.19	-0.6
52,073	+		GFF3546	0.19	-2.4
52,073	+		GFF3546	0.19	-2.4
52,073	+		GFF3546	0.19	-0.2
52,073	+		GFF3546	0.19	-0.7
52,073	+		GFF3546	0.19	-1.0
52,074	-		GFF3546	0.19	-0.3
52,074	-		GFF3546	0.19	-0.9
52,074	-		GFF3546	0.19	-0.8
52,074	-		GFF3546	0.19	+0.1
52,074	-		GFF3546	0.19	-0.2
52,074	-		GFF3546	0.19	+0.1
52,250	+		GFF3546	0.28	-0.5
52,250	+		GFF3546	0.28	+0.7
52,250	+		GFF3546	0.28	-0.2
52,250	+		GFF3546	0.28	-1.1
52,250	+		GFF3546	0.28	-0.8
52,251	-		GFF3546	0.28	+0.2
52,251	-		GFF3546	0.28	-0.5
52,251	-		GFF3546	0.28	-0.9
52,289	+		GFF3546	0.30	-0.4
52,289	+		GFF3546	0.30	-0.1
52,289	+		GFF3546	0.30	+0.1
52,289	+		GFF3546	0.30	-1.3
52,290	-		GFF3546	0.30	-1.1
52,290	-		GFF3546	0.30	-0.9
52,290	-		GFF3546	0.30	-1.3
52,290	-		GFF3546	0.30	-0.7
52,290	-		GFF3546	0.30	-0.8
52,290	-		GFF3546	0.30	-0.6
52,451	+		GFF3546	0.38	+0.2
52,451	+		GFF3546	0.38	-0.4
52,451	+		GFF3546	0.38	-0.6
52,451	+		GFF3546	0.38	-0.8
52,452	-		GFF3546	0.38	+0.3
52,452	-		GFF3546	0.38	-0.6
52,463	+		GFF3546	0.38	-0.3
52,463	+		GFF3546	0.38	-0.6
52,463	+		GFF3546	0.38	-0.2
52,463	+		GFF3546	0.38	+0.1
52,464	-		GFF3546	0.38	-1.0
52,464	-		GFF3546	0.38	-0.3
52,464	-		GFF3546	0.38	-0.5
52,464	-		GFF3546	0.38	-0.6
52,464	-		GFF3546	0.38	-0.1
52,464	-		GFF3546	0.38	-0.6
52,464	-		GFF3546	0.38	-1.1
52,464	-		GFF3546	0.38	-0.7
52,464	-		GFF3546	0.38	-1.3
52,464	-		GFF3546	0.38	-0.2
52,484	+		GFF3546	0.39	-0.8
52,484	+		GFF3546	0.39	-1.1
52,484	+		GFF3546	0.39	-0.3
52,484	+		GFF3546	0.39	-0.7
52,485	-		GFF3546	0.39	-0.9
52,485	-		GFF3546	0.39	-1.1
52,485	-		GFF3546	0.39	-1.0
52,485	-		GFF3546	0.39	-1.2
52,535	+		GFF3546	0.42	-1.6
52,535	+		GFF3546	0.42	-0.9
52,535	+		GFF3546	0.42	-0.4
52,536	-		GFF3546	0.42	-0.6
52,536	-		GFF3546	0.42	-1.0
52,536	-		GFF3546	0.42	-0.8
52,536	-		GFF3546	0.42	-0.7
52,536	-		GFF3546	0.42	-1.7
52,550	+		GFF3546	0.42	-0.8
52,550	+		GFF3546	0.42	-1.0
52,550	+		GFF3546	0.42	-0.6
52,550	+		GFF3546	0.42	-1.0
52,550	+		GFF3546	0.42	+0.0
52,550	+		GFF3546	0.42	-1.3
52,550	+		GFF3546	0.42	-0.0
52,550	+		GFF3546	0.42	+0.4
52,550	+		GFF3546	0.42	+0.3
52,550	+		GFF3546	0.42	-0.9
52,550	+		GFF3546	0.42	-1.0
52,550	+		GFF3546	0.42	-0.7
52,550	+		GFF3546	0.42	-1.1
52,550	+		GFF3546	0.42	+0.7
52,550	+		GFF3546	0.42	-0.3
52,550	+		GFF3546	0.42	+0.6
52,550	+		GFF3546	0.42	-1.0
52,550	+		GFF3546	0.42	+0.0
52,550	+		GFF3546	0.42	+0.2
52,550	+		GFF3546	0.42	-0.1
52,550	+		GFF3546	0.42	-0.6
52,551	-		GFF3546	0.42	-1.1
52,551	-		GFF3546	0.42	+0.7
52,551	-		GFF3546	0.42	-2.1
52,551	-		GFF3546	0.42	+0.6
52,551	-		GFF3546	0.42	-0.5
52,551	-		GFF3546	0.42	-0.3
52,551	-		GFF3546	0.42	-1.1
52,551	-		GFF3546	0.42	-0.5
52,551	-		GFF3546	0.42	-1.0
52,551	-		GFF3546	0.42	-1.0
52,551	-		GFF3546	0.42	-1.5
52,551	-		GFF3546	0.42	-1.1
52,551	-		GFF3546	0.42	-1.7
52,551	-		GFF3546	0.42	+1.0
52,613	+		GFF3546	0.46	+0.5
52,613	+		GFF3546	0.46	-0.4
52,613	+		GFF3546	0.46	-0.6
52,613	+		GFF3546	0.46	-0.7
52,613	+		GFF3546	0.46	-0.3
52,614	-		GFF3546	0.46	-0.4
52,614	-		GFF3546	0.46	+0.2
52,614	-		GFF3546	0.46	+0.3
52,614	-		GFF3546	0.46	-0.5
52,614	-		GFF3546	0.46	-1.2
52,664	+		GFF3546	0.48	-0.7
52,664	+		GFF3546	0.48	+1.1
52,664	+		GFF3546	0.48	-0.8
52,664	+		GFF3546	0.48	-0.3
52,664	+		GFF3546	0.48	-0.8
52,664	+		GFF3546	0.48	-0.9
52,665	-		GFF3546	0.48	-0.9
52,665	-		GFF3546	0.48	-0.3
52,973	+		GFF3546	0.63	+1.0
52,973	+		GFF3546	0.63	-0.4
52,973	+		GFF3546	0.63	-0.7
52,973	+		GFF3546	0.63	+0.5
52,973	+		GFF3546	0.63	-0.7
52,974	-		GFF3546	0.63	+0.6
52,974	-		GFF3546	0.63	+0.3
52,974	-		GFF3546	0.63	-2.0
52,985	+		GFF3546	0.64	-0.6
52,985	+		GFF3546	0.64	-0.9
52,985	+		GFF3546	0.64	-1.4
52,986	-		GFF3546	0.64	-0.7
52,986	-		GFF3546	0.64	-2.5
53,067	-		GFF3546	0.68	-1.3
53,111	+		GFF3546	0.70	-0.1
53,111	+		GFF3546	0.70	-0.8
53,111	+		GFF3546	0.70	+0.7
53,111	+		GFF3546	0.70	+0.7
53,111	+		GFF3546	0.70	-0.1
53,111	+		GFF3546	0.70	-0.4
53,111	+		GFF3546	0.70	+1.2
53,111	+		GFF3546	0.70	-1.1
53,111	+		GFF3546	0.70	-0.1
53,112	-		GFF3546	0.70	-0.6
53,112	-		GFF3546	0.70	-0.7
53,112	-		GFF3546	0.70	-0.6
53,112	-		GFF3546	0.70	-0.7
53,112	-		GFF3546	0.70	-1.2
53,112	-		GFF3546	0.70	-0.9
53,112	-		GFF3546	0.70	-0.7
53,112	-		GFF3546	0.70	-0.7
53,147	+		GFF3546	0.72	-1.5
53,147	+		GFF3546	0.72	-0.3
53,147	+		GFF3546	0.72	+1.7
53,147	+		GFF3546	0.72	-0.6
53,147	+		GFF3546	0.72	-0.4
53,147	+		GFF3546	0.72	-0.4
53,148	-		GFF3546	0.72	-0.4
53,148	-		GFF3546	0.72	-1.3
53,148	-		GFF3546	0.72	+0.9
53,148	-		GFF3546	0.72	-0.2
53,148	-		GFF3546	0.72	-1.3
53,148	-		GFF3546	0.72	-1.0
53,148	-		GFF3546	0.72	-0.4
53,148	-		GFF3546	0.72	+0.6
53,148	-		GFF3546	0.72	+0.0
53,148	-		GFF3546	0.72	-0.5
53,148	-		GFF3546	0.72	-0.4
53,148	-		GFF3546	0.72	-0.4
53,150	+		GFF3546	0.72	-0.7
53,150	+		GFF3546	0.72	-0.6
53,150	+		GFF3546	0.72	-0.9
53,150	+		GFF3546	0.72	+1.2
53,150	+		GFF3546	0.72	-1.2
53,150	+		GFF3546	0.72	-0.5
53,150	+		GFF3546	0.72	-2.4
53,150	+		GFF3546	0.72	-1.8
53,150	+		GFF3546	0.72	+0.0
53,150	+		GFF3546	0.72	-1.5
53,150	+		GFF3546	0.72	-0.8
53,150	+		GFF3546	0.72	-0.2
53,150	+		GFF3546	0.72	-0.1
53,150	+		GFF3546	0.72	-1.5
53,151	-		GFF3546	0.72	-0.1
53,151	-		GFF3546	0.72	+1.7
53,151	-		GFF3546	0.72	+0.6
53,151	-		GFF3546	0.72	-0.4
53,151	-		GFF3546	0.72	+2.3
53,151	-		GFF3546	0.72	-1.2
53,151	-		GFF3546	0.72	-0.9
53,151	-		GFF3546	0.72	-0.8
53,267	+		GFF3546	0.78	-1.3
53,267	+		GFF3546	0.78	-0.6
53,267	+		GFF3546	0.78	-1.4
53,267	+		GFF3546	0.78	-0.6
53,267	+		GFF3546	0.78	-0.6
53,268	-		GFF3546	0.78	+0.6
53,268	-		GFF3546	0.78	-0.3
53,268	-		GFF3546	0.78	-0.4
53,268	-		GFF3546	0.78	-0.9
53,268	-		GFF3546	0.78	-0.8
53,690	+				-0.4
53,690	+				+0.7
53,690	+				+1.3
53,691	-				-0.6
53,691	-				-0.2
53,691	-				-0.7
53,691	-				-0.3
53,691	-				-0.0
53,806	+		GFF3548	0.14	-1.2
53,807	-		GFF3548	0.14	-0.1
53,807	-		GFF3548	0.14	-0.2
53,807	-		GFF3548	0.14	+0.8
54,013	+		GFF3548	0.48	-1.1
54,013	+		GFF3548	0.48	+1.1
54,013	+		GFF3548	0.48	+0.3
54,013	+		GFF3548	0.48	-0.6
54,013	+		GFF3548	0.48	+0.2
54,013	+		GFF3548	0.48	-0.4
54,013	+		GFF3548	0.48	-1.6
54,013	+		GFF3548	0.48	-0.6
54,014	-		GFF3548	0.48	+0.2
54,014	-		GFF3548	0.48	+0.2
54,014	-		GFF3548	0.48	-0.8
54,096	+		GFF3548	0.61	-0.8
54,115	+		GFF3548	0.64	-1.2
54,115	+		GFF3548	0.64	-1.6
54,116	-		GFF3548	0.64	+0.7
54,116	-		GFF3548	0.64	-0.8
54,116	-		GFF3548	0.64	-0.7
54,116	-		GFF3548	0.64	+0.5
54,256	+		GFF3548	0.87	-0.0
54,256	+		GFF3548	0.87	+0.6
54,256	+		GFF3548	0.87	-0.0
54,257	-		GFF3548	0.87	-1.7
54,257	-		GFF3548	0.87	+0.2
54,257	-		GFF3548	0.87	-0.2
54,257	-		GFF3548	0.87	+0.7
54,257	-		GFF3548	0.87	-0.5
54,257	-		GFF3548	0.87	+0.7
54,540	-		GFF3549	0.11	-0.3