Strain Fitness in Variovorax sp. SCN45 around GFF3521

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3520 and GFF3521 are separated by 4 nucleotidesGFF3521 and GFF3522 are separated by 125 nucleotides GFF3520 - Osmosensitive K+ channel histidine kinase KdpD, at 23,992 to 26,745 GFF3520 GFF3521 - DNA-binding response regulator KdpE, at 26,750 to 27,454 GFF3521 GFF3522 - no description, at 27,580 to 28,761 GFF3522 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 25.852 kb on + strand, within GFF3520at 25.852 kb on + strand, within GFF3520at 25.853 kb on - strand, within GFF3520at 25.853 kb on - strand, within GFF3520at 25.996 kb on + strand, within GFF3520at 25.997 kb on - strand, within GFF3520at 25.997 kb on - strand, within GFF3520at 25.997 kb on - strand, within GFF3520at 25.997 kb on - strand, within GFF3520at 26.024 kb on + strand, within GFF3520at 26.024 kb on + strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.025 kb on - strand, within GFF3520at 26.437 kb on + strand, within GFF3520at 26.437 kb on + strand, within GFF3520at 27.047 kb on + strand, within GFF3521at 27.047 kb on + strand, within GFF3521at 27.047 kb on + strand, within GFF3521at 27.048 kb on - strand, within GFF3521at 27.329 kb on + strand, within GFF3521at 27.330 kb on - strand, within GFF3521at 27.330 kb on - strand, within GFF3521at 27.347 kb on + strand, within GFF3521at 27.347 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.438 kb on - strandat 27.452 kb on + strandat 27.463 kb on + strandat 27.463 kb on + strandat 27.464 kb on - strandat 27.565 kb on + strandat 27.565 kb on + strandat 27.565 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 28.153 kb on + strand, within GFF3522at 28.153 kb on + strand, within GFF3522at 28.153 kb on - strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.289 kb on - strand, within GFF3522at 28.289 kb on - strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.294 kb on + strand, within GFF3522

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
25,852 + GFF3520 0.68 -0.3
25,852 + GFF3520 0.68 -0.3
25,853 - GFF3520 0.68 -0.1
25,853 - GFF3520 0.68 -0.4
25,996 + GFF3520 0.73 -0.5
25,997 - GFF3520 0.73 +0.7
25,997 - GFF3520 0.73 -1.2
25,997 - GFF3520 0.73 -0.3
25,997 - GFF3520 0.73 -0.8
26,024 + GFF3520 0.74 -0.4
26,024 + GFF3520 0.74 -0.3
26,025 - GFF3520 0.74 -0.1
26,025 - GFF3520 0.74 -0.8
26,025 - GFF3520 0.74 -0.1
26,025 - GFF3520 0.74 +0.7
26,025 - GFF3520 0.74 +0.3
26,025 - GFF3520 0.74 -0.6
26,025 - GFF3520 0.74 -0.8
26,025 - GFF3520 0.74 -0.1
26,025 - GFF3520 0.74 +0.2
26,437 + GFF3520 0.89 -0.0
26,437 + GFF3520 0.89 -0.2
27,047 + GFF3521 0.42 +0.3
27,047 + GFF3521 0.42 +0.3
27,047 + GFF3521 0.42 +0.2
27,048 - GFF3521 0.42 +0.3
27,329 + GFF3521 0.82 -0.1
27,330 - GFF3521 0.82 -0.1
27,330 - GFF3521 0.82 -0.7
27,347 + GFF3521 0.85 -0.2
27,347 + GFF3521 0.85 -0.1
27,359 + GFF3521 0.86 -0.1
27,359 + GFF3521 0.86 +0.6
27,359 + GFF3521 0.86 -0.2
27,359 + GFF3521 0.86 -0.5
27,359 + GFF3521 0.86 -0.4
27,359 + GFF3521 0.86 +0.5
27,360 - GFF3521 0.87 -0.8
27,360 - GFF3521 0.87 +0.0
27,360 - GFF3521 0.87 +0.9
27,360 - GFF3521 0.87 +0.5
27,360 - GFF3521 0.87 +0.2
27,360 - GFF3521 0.87 -1.2
27,360 - GFF3521 0.87 -0.4
27,360 - GFF3521 0.87 -0.4
27,360 - GFF3521 0.87 -1.1
27,360 - GFF3521 0.87 +0.8
27,438 - +0.3
27,452 + -1.1
27,463 + +0.7
27,463 + -2.4
27,464 - +1.0
27,565 + -0.4
27,565 + -0.8
27,565 + -0.8
27,587 + +0.7
27,587 + -0.3
27,587 + -1.2
27,587 + +1.2
27,587 + -0.6
27,587 + -0.0
27,587 + -1.4
27,587 + +0.2
27,587 + -0.1
27,587 + -0.9
27,588 - -0.5
27,588 - -0.4
27,588 - +0.4
27,588 - -0.8
27,588 - -1.0
27,588 - +1.1
27,588 - -0.1
27,588 - +1.1
27,588 - +1.2
27,588 - +1.2
28,153 + GFF3522 0.48 -0.4
28,153 + GFF3522 0.48 +0.7
28,153 - GFF3522 0.48 -0.1
28,288 + GFF3522 0.60 +0.0
28,288 + GFF3522 0.60 +0.2
28,288 + GFF3522 0.60 +0.7
28,288 + GFF3522 0.60 -0.5
28,288 + GFF3522 0.60 -1.3
28,289 - GFF3522 0.60 +0.5
28,289 - GFF3522 0.60 +0.2
28,294 + GFF3522 0.60 -0.1
28,294 + GFF3522 0.60 +0.3
28,294 + GFF3522 0.60 +0.1

Or see this region's nucleotide sequence