Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3456 and GFF3457 are separated by 49 nucleotides GFF3457 and GFF3458 overlap by 4 nucleotides GFF3458 and GFF3459 overlap by 4 nucleotides
GFF3456 - Possible regulatory protein similar to urea ABC transporter, substrate binding protein, at 277,541 to 278,695
GFF3456
GFF3457 - Nitric oxide reductase activation protein NorD, at 278,745 to 280,397
GFF3457
GFF3458 - Rubisco activation protein CbbQ, at 280,394 to 281,212
GFF3458
GFF3459 - Aliphatic amidase AmiE (EC 3.5.1.4), at 281,209 to 282,246
GFF3459
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -1
0
1 at 277.827 kb on + strand, within GFF3456 at 277.828 kb on - strand, within GFF3456 at 278.046 kb on + strand, within GFF3456 at 278.047 kb on - strand, within GFF3456 at 278.169 kb on + strand, within GFF3456 at 278.250 kb on + strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.269 kb on - strand, within GFF3456 at 278.344 kb on - strand, within GFF3456 at 278.362 kb on - strand, within GFF3456 at 278.376 kb on + strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.451 kb on + strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.675 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.726 kb on + strand at 278.822 kb on - strand at 278.851 kb on + strand at 278.851 kb on + strand at 278.852 kb on - strand at 278.944 kb on + strand, within GFF3457 at 279.145 kb on + strand, within GFF3457 at 279.145 kb on + strand, within GFF3457 at 279.146 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.149 kb on - strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.151 kb on + strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.152 kb on - strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.781 kb on + strand, within GFF3457 at 279.782 kb on - strand, within GFF3457 at 279.782 kb on - strand, within GFF3457 at 279.817 kb on + strand, within GFF3457 at 279.818 kb on - strand, within GFF3457 at 279.895 kb on + strand, within GFF3457 at 279.896 kb on - strand, within GFF3457 at 280.525 kb on - strand, within GFF3458 at 280.752 kb on + strand, within GFF3458 at 280.753 kb on - strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.817 kb on + strand, within GFF3458 at 280.890 kb on + strand, within GFF3458
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 277,827 + GFF3456 0.25 -0.2 277,828 - GFF3456 0.25 +0.2 278,046 + GFF3456 0.44 -1.3 278,047 - GFF3456 0.44 -1.5 278,169 + GFF3456 0.54 -0.2 278,250 + GFF3456 0.61 +0.8 278,251 - GFF3456 0.61 -0.2 278,251 - GFF3456 0.61 +0.8 278,269 - GFF3456 0.63 -0.4 278,344 - GFF3456 0.70 -0.3 278,362 - GFF3456 0.71 -0.4 278,376 + GFF3456 0.72 -0.6 278,377 - GFF3456 0.72 +0.1 278,377 - GFF3456 0.72 -0.3 278,451 + GFF3456 0.79 -0.7 278,452 - GFF3456 0.79 -0.8 278,452 - GFF3456 0.79 -0.8 278,675 + +0.5 278,726 + -0.0 278,726 + +0.0 278,726 + -0.7 278,726 + +0.9 278,822 - +0.4 278,851 + +1.0 278,851 + +0.7 278,852 - +0.3 278,944 + GFF3457 0.12 -0.4 279,145 + GFF3457 0.24 -0.4 279,145 + GFF3457 0.24 -0.5 279,146 - GFF3457 0.24 +0.8 279,149 - GFF3457 0.24 -0.8 279,149 - GFF3457 0.24 -0.5 279,149 - GFF3457 0.24 -0.1 279,149 - GFF3457 0.24 -1.1 279,149 - GFF3457 0.24 -0.6 279,151 + GFF3457 0.25 -0.1 279,151 + GFF3457 0.25 -1.0 279,151 + GFF3457 0.25 -1.3 279,152 - GFF3457 0.25 -0.4 279,152 - GFF3457 0.25 -0.0 279,152 - GFF3457 0.25 -0.7 279,152 - GFF3457 0.25 +1.5 279,152 - GFF3457 0.25 -0.2 279,152 - GFF3457 0.25 -0.2 279,152 - GFF3457 0.25 -0.5 279,152 - GFF3457 0.25 -0.3 279,781 + GFF3457 0.63 -0.4 279,781 + GFF3457 0.63 -0.2 279,781 + GFF3457 0.63 -0.8 279,782 - GFF3457 0.63 +0.4 279,782 - GFF3457 0.63 -0.5 279,817 + GFF3457 0.65 -0.6 279,818 - GFF3457 0.65 -0.9 279,895 + GFF3457 0.70 +0.0 279,896 - GFF3457 0.70 -0.6 280,525 - GFF3458 0.16 +0.4 280,752 + GFF3458 0.44 +0.2 280,753 - GFF3458 0.44 -0.5 280,817 + GFF3458 0.52 -0.4 280,817 + GFF3458 0.52 -0.3 280,817 + GFF3458 0.52 -0.8 280,890 + GFF3458 0.61 -0.3
Or see this region's nucleotide sequence