Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3447 and GFF3448 overlap by 4 nucleotides GFF3448 and GFF3449 are separated by 19 nucleotides GFF3449 and GFF3450 are separated by 130 nucleotides
GFF3447 - FIG00555764: hypothetical protein, at 269,842 to 270,732
GFF3447
GFF3448 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 270,729 to 271,493
GFF3448
GFF3449 - Intradiol ring-cleavage dioxygenase:Catechol dioxygenase, N-terminal, at 271,513 to 272,379
GFF3449
GFF3450 - Transcriptional regulator, LacI family, at 272,510 to 273,544
GFF3450
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 270.537 kb on - strand, within GFF3447 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.420 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.500 kb on - strand at 271.930 kb on + strand, within GFF3449 at 271.930 kb on + strand, within GFF3449 at 271.930 kb on + strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 272.410 kb on + strand at 272.410 kb on + strand at 272.416 kb on + strand at 272.416 kb on + strand at 272.682 kb on - strand, within GFF3450 at 272.816 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.198 kb on - strand, within GFF3450 at 273.299 kb on + strand, within GFF3450
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 270,537 - GFF3447 0.78 -1.3 271,003 + GFF3448 0.36 -0.3 271,003 + GFF3448 0.36 -0.3 271,003 + GFF3448 0.36 -0.7 271,003 + GFF3448 0.36 -0.7 271,004 - GFF3448 0.36 -0.4 271,004 - GFF3448 0.36 -0.3 271,004 - GFF3448 0.36 -0.3 271,420 + +0.0 271,493 + +0.1 271,493 + +0.5 271,493 + -0.7 271,493 + +0.2 271,493 + -0.0 271,493 + -0.9 271,494 - -0.6 271,494 - +0.9 271,494 - -0.8 271,494 - -0.2 271,494 - -0.0 271,500 - -0.8 271,930 + GFF3449 0.48 -2.4 271,930 + GFF3449 0.48 -0.7 271,930 + GFF3449 0.48 +0.6 271,931 - GFF3449 0.48 -0.4 271,931 - GFF3449 0.48 -0.6 271,931 - GFF3449 0.48 +0.6 271,931 - GFF3449 0.48 -0.6 271,931 - GFF3449 0.48 -1.0 272,410 + -0.0 272,410 + -0.8 272,416 + +0.4 272,416 + -0.5 272,682 - GFF3450 0.17 -1.0 272,816 + GFF3450 0.30 -1.7 273,197 + GFF3450 0.66 -0.1 273,197 + GFF3450 0.66 -0.2 273,197 + GFF3450 0.66 -0.8 273,198 - GFF3450 0.66 -0.2 273,299 + GFF3450 0.76 -0.5
Or see this region's nucleotide sequence