Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3424 and GFF3425 are separated by 104 nucleotides GFF3425 and GFF3426 overlap by 4 nucleotides GFF3426 and GFF3427 overlap by 4 nucleotides
GFF3424 - FIG00443816: hypothetical protein, at 248,999 to 249,709
GFF3424
GFF3425 - no description, at 249,814 to 250,161
GFF3425
GFF3426 - Predicted kinase, at 250,158 to 250,973
GFF3426
GFF3427 - FIG01006093: hypothetical protein, at 250,970 to 251,479
GFF3427
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1 at 249.031 kb on + strand at 249.032 kb on - strand at 249.032 kb on - strand at 249.084 kb on + strand, within GFF3424 at 249.085 kb on - strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.319 kb on - strand, within GFF3424 at 249.375 kb on + strand, within GFF3424 at 249.376 kb on - strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.457 kb on - strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.508 kb on - strand, within GFF3424 at 249.508 kb on - strand, within GFF3424 at 249.513 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 250.057 kb on + strand, within GFF3425 at 250.057 kb on + strand, within GFF3425 at 250.058 kb on - strand, within GFF3425 at 250.269 kb on + strand, within GFF3426 at 250.269 kb on + strand, within GFF3426 at 250.569 kb on + strand, within GFF3426 at 250.569 kb on + strand, within GFF3426
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 249,031 + -0.9 249,032 - -0.8 249,032 - -0.2 249,084 + GFF3424 0.12 -1.1 249,085 - GFF3424 0.12 +0.2 249,303 + GFF3424 0.43 +0.1 249,303 + GFF3424 0.43 -1.2 249,303 + GFF3424 0.43 -0.8 249,304 - GFF3424 0.43 -1.3 249,304 - GFF3424 0.43 -0.5 249,304 - GFF3424 0.43 -0.8 249,319 - GFF3424 0.45 -0.3 249,375 + GFF3424 0.53 -0.6 249,376 - GFF3424 0.53 -0.2 249,456 + GFF3424 0.64 +0.8 249,456 + GFF3424 0.64 -0.6 249,456 + GFF3424 0.64 -0.5 249,457 - GFF3424 0.64 -0.6 249,507 + GFF3424 0.71 -0.3 249,507 + GFF3424 0.71 -0.6 249,507 + GFF3424 0.71 -0.8 249,508 - GFF3424 0.72 -0.7 249,508 - GFF3424 0.72 +0.2 249,513 + GFF3424 0.72 +1.2 249,579 + GFF3424 0.82 -0.6 249,579 + GFF3424 0.82 -0.3 249,579 + GFF3424 0.82 -0.1 249,579 + GFF3424 0.82 +1.2 249,579 + GFF3424 0.82 -0.4 249,579 + GFF3424 0.82 -0.5 249,579 + GFF3424 0.82 -0.1 249,579 + GFF3424 0.82 -0.6 249,580 - GFF3424 0.82 -0.8 249,580 - GFF3424 0.82 +0.2 249,580 - GFF3424 0.82 +0.4 249,580 - GFF3424 0.82 -0.5 249,580 - GFF3424 0.82 +0.2 249,580 - GFF3424 0.82 -0.9 250,057 + GFF3425 0.70 -0.9 250,057 + GFF3425 0.70 -1.9 250,058 - GFF3425 0.70 -0.2 250,269 + GFF3426 0.14 -0.8 250,269 + GFF3426 0.14 -0.2 250,569 + GFF3426 0.50 -0.4 250,569 + GFF3426 0.50 -0.7
Or see this region's nucleotide sequence