Strain Fitness in Variovorax sp. SCN45 around GFF3400

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3399 and GFF3400 are separated by 30 nucleotidesGFF3400 and GFF3401 are separated by 124 nucleotidesGFF3401 and GFF3402 are separated by 17 nucleotidesGFF3402 and GFF3403 overlap by 4 nucleotides GFF3399 - Benzoate--CoA ligase (EC 6.2.1.25), at 221,802 to 223,349 GFF3399 GFF3400 - Benzaldehyde dehydrogenase, at 223,380 to 224,930 GFF3400 GFF3401 - P-hydroxylaminobenzoate lyase, at 225,055 to 225,546 GFF3401 GFF3402 - no description, at 225,564 to 225,713 GFF3402 GFF3403 - Benzoate catabolism regulator with shikimate kinase domain, at 225,710 to 226,654 GFF3403 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2 3at 222.694 kb on + strand, within GFF3399at 222.694 kb on + strand, within GFF3399at 222.694 kb on + strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.695 kb on - strand, within GFF3399at 222.829 kb on + strand, within GFF3399at 222.829 kb on + strand, within GFF3399at 222.830 kb on - strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.057 kb on + strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.058 kb on - strand, within GFF3399at 223.063 kb on + strand, within GFF3399at 223.063 kb on + strand, within GFF3399at 223.064 kb on - strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.114 kb on + strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.115 kb on - strand, within GFF3399at 223.246 kb on + strandat 223.246 kb on + strandat 223.247 kb on - strandat 223.273 kb on + strandat 223.381 kb on + strandat 223.382 kb on - strandat 223.382 kb on - strandat 223.439 kb on - strandat 223.439 kb on - strandat 223.633 kb on + strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.634 kb on - strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.635 kb on + strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 223.636 kb on - strand, within GFF3400at 224.005 kb on + strand, within GFF3400at 224.005 kb on + strand, within GFF3400at 224.006 kb on - strand, within GFF3400at 224.006 kb on - strand, within GFF3400at 224.295 kb on + strand, within GFF3400at 224.295 kb on + strand, within GFF3400at 224.296 kb on - strand, within GFF3400at 224.296 kb on - strand, within GFF3400at 224.596 kb on + strand, within GFF3400at 224.680 kb on + strand, within GFF3400at 224.680 kb on + strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.681 kb on - strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.683 kb on + strand, within GFF3400at 224.746 kb on + strand, within GFF3400at 224.746 kb on + strand, within GFF3400at 224.747 kb on - strand, within GFF3400at 224.747 kb on - strand, within GFF3400at 224.908 kb on + strandat 224.908 kb on + strandat 224.908 kb on + strandat 224.908 kb on + strandat 224.908 kb on + strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 224.909 kb on - strandat 225.051 kb on + strandat 225.051 kb on + strandat 225.051 kb on + strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.052 kb on - strandat 225.058 kb on + strandat 225.058 kb on + strandat 225.058 kb on + strandat 225.058 kb on + strandat 225.059 kb on - strandat 225.059 kb on - strandat 225.059 kb on - strandat 225.059 kb on - strandat 225.092 kb on + strandat 225.092 kb on + strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.323 kb on + strand, within GFF3401at 225.324 kb on - strand, within GFF3401at 225.563 kb on + strandat 225.563 kb on + strandat 225.563 kb on + strandat 225.564 kb on - strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.619 kb on + strand, within GFF3402at 225.619 kb on + strand, within GFF3402at 225.619 kb on + strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.620 kb on - strand, within GFF3402at 225.723 kb on + strandat 225.723 kb on + strandat 225.723 kb on + strandat 225.723 kb on + strandat 225.724 kb on - strandat 225.724 kb on - strandat 225.724 kb on - strandat 225.724 kb on - strandat 225.917 kb on + strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 225.918 kb on - strand, within GFF3403at 225.918 kb on - strand, within GFF3403

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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222,694 + GFF3399 0.58 -0.5
222,694 + GFF3399 0.58 -0.2
222,694 + GFF3399 0.58 +0.0
222,695 - GFF3399 0.58 -0.9
222,695 - GFF3399 0.58 +1.2
222,695 - GFF3399 0.58 +0.2
222,695 - GFF3399 0.58 -0.4
222,695 - GFF3399 0.58 -1.0
222,695 - GFF3399 0.58 +0.8
222,695 - GFF3399 0.58 +1.8
222,829 + GFF3399 0.66 +0.5
222,829 + GFF3399 0.66 -0.2
222,830 - GFF3399 0.66 -1.8
223,057 + GFF3399 0.81 -0.3
223,057 + GFF3399 0.81 +0.5
223,057 + GFF3399 0.81 +0.2
223,057 + GFF3399 0.81 +0.0
223,057 + GFF3399 0.81 -0.7
223,057 + GFF3399 0.81 +0.0
223,057 + GFF3399 0.81 -0.6
223,057 + GFF3399 0.81 -2.7
223,057 + GFF3399 0.81 +0.3
223,058 - GFF3399 0.81 -0.1
223,058 - GFF3399 0.81 +1.8
223,058 - GFF3399 0.81 +0.3
223,058 - GFF3399 0.81 -0.5
223,058 - GFF3399 0.81 +0.3
223,058 - GFF3399 0.81 +0.0
223,058 - GFF3399 0.81 -0.1
223,058 - GFF3399 0.81 -2.0
223,058 - GFF3399 0.81 +1.4
223,058 - GFF3399 0.81 -0.0
223,058 - GFF3399 0.81 +0.8
223,063 + GFF3399 0.81 -0.7
223,063 + GFF3399 0.81 +2.8
223,064 - GFF3399 0.82 -0.0
223,114 + GFF3399 0.85 -0.3
223,114 + GFF3399 0.85 -0.4
223,114 + GFF3399 0.85 -0.2
223,114 + GFF3399 0.85 -0.6
223,115 - GFF3399 0.85 +0.3
223,115 - GFF3399 0.85 -0.6
223,115 - GFF3399 0.85 +0.3
223,115 - GFF3399 0.85 -0.2
223,246 + -0.4
223,246 + +0.2
223,247 - -1.2
223,273 + +0.3
223,381 + -0.1
223,382 - -0.5
223,382 - +0.1
223,439 - -0.0
223,439 - +0.3
223,633 + GFF3400 0.16 +0.4
223,634 - GFF3400 0.16 -1.2
223,634 - GFF3400 0.16 -1.5
223,634 - GFF3400 0.16 -0.8
223,634 - GFF3400 0.16 -1.4
223,635 + GFF3400 0.16 +0.1
223,635 + GFF3400 0.16 -0.5
223,635 + GFF3400 0.16 -0.9
223,635 + GFF3400 0.16 -1.4
223,635 + GFF3400 0.16 -0.2
223,635 + GFF3400 0.16 -0.7
223,635 + GFF3400 0.16 -0.9
223,635 + GFF3400 0.16 -1.9
223,635 + GFF3400 0.16 -0.0
223,636 - GFF3400 0.17 +0.0
223,636 - GFF3400 0.17 -0.3
223,636 - GFF3400 0.17 -0.1
223,636 - GFF3400 0.17 +0.2
223,636 - GFF3400 0.17 -2.4
223,636 - GFF3400 0.17 +0.7
224,005 + GFF3400 0.40 -1.6
224,005 + GFF3400 0.40 -0.5
224,006 - GFF3400 0.40 -0.7
224,006 - GFF3400 0.40 +1.0
224,295 + GFF3400 0.59 -0.4
224,295 + GFF3400 0.59 -0.3
224,296 - GFF3400 0.59 -0.2
224,296 - GFF3400 0.59 -1.2
224,596 + GFF3400 0.78 -0.2
224,680 + GFF3400 0.84 -1.0
224,680 + GFF3400 0.84 +0.5
224,681 - GFF3400 0.84 -0.6
224,681 - GFF3400 0.84 +0.2
224,681 - GFF3400 0.84 -0.2
224,681 - GFF3400 0.84 -0.5
224,683 + GFF3400 0.84 +0.6
224,683 + GFF3400 0.84 -0.5
224,683 + GFF3400 0.84 -0.4
224,683 + GFF3400 0.84 +0.1
224,683 + GFF3400 0.84 -0.5
224,746 + GFF3400 0.88 -0.3
224,746 + GFF3400 0.88 -1.3
224,747 - GFF3400 0.88 -1.1
224,747 - GFF3400 0.88 +1.4
224,908 + -0.4
224,908 + -0.8
224,908 + -0.2
224,908 + +0.0
224,908 + +0.8
224,909 - +0.2
224,909 - -0.3
224,909 - -1.1
224,909 - -0.2
224,909 - -0.2
224,909 - -0.2
224,909 - +0.2
224,909 - -0.7
225,051 + -0.4
225,051 + -0.9
225,051 + -0.2
225,052 - -1.9
225,052 - +0.3
225,052 - +0.2
225,052 - +0.5
225,052 - +0.2
225,058 + -0.4
225,058 + +1.2
225,058 + -0.4
225,058 + -0.0
225,059 - -0.2
225,059 - +0.2
225,059 - +0.4
225,059 - +0.2
225,092 + -0.4
225,092 + +0.2
225,093 - +0.5
225,093 - +0.3
225,093 - -0.2
225,323 + GFF3401 0.54 +0.1
225,324 - GFF3401 0.55 -0.4
225,563 + -0.2
225,563 + -0.3
225,563 + -1.3
225,564 - -1.3
225,570 + -1.7
225,570 + -0.0
225,570 + -0.3
225,570 + -0.7
225,570 + +1.2
225,571 - -0.1
225,571 - -0.2
225,571 - +0.3
225,571 - +0.2
225,571 - -0.2
225,619 + GFF3402 0.37 -0.6
225,619 + GFF3402 0.37 +1.6
225,619 + GFF3402 0.37 -0.9
225,620 - GFF3402 0.37 +1.5
225,620 - GFF3402 0.37 -0.6
225,620 - GFF3402 0.37 -0.8
225,620 - GFF3402 0.37 -0.7
225,723 + -0.2
225,723 + -0.6
225,723 + -1.2
225,723 + -0.5
225,724 - -0.4
225,724 - -0.9
225,724 - +0.2
225,724 - -0.4
225,917 + GFF3403 0.22 +0.2
225,918 - GFF3403 0.22 -1.8
225,918 - GFF3403 0.22 -1.0
225,918 - GFF3403 0.22 -0.8

Or see this region's nucleotide sequence