Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3392 and GFF3393 are separated by 31 nucleotides GFF3393 and GFF3394 overlap by 1 nucleotides GFF3394 and GFF3395 are separated by 127 nucleotides
GFF3392 - Transcriptional regulator, AraC family, at 215,223 to 216,101
GFF3392
GFF3393 - Benzoate ABC transporter, ATP-binding protein 2, at 216,133 to 216,834
GFF3393
GFF3394 - Benzoate ABC transporter, ATP-binding protein 1, at 216,834 to 217,583
GFF3394
GFF3395 - Benzoate ABC transporter, permease protein 2, at 217,711 to 218,661
GFF3395
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 216.134 kb on + strand at 216.134 kb on + strand at 216.596 kb on + strand, within GFF3393 at 216.596 kb on + strand, within GFF3393 at 216.597 kb on - strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.803 kb on + strand at 216.804 kb on - strand at 216.804 kb on - strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.807 kb on - strand at 216.807 kb on - strand at 217.331 kb on - strand, within GFF3394 at 218.054 kb on + strand, within GFF3395 at 218.055 kb on - strand, within GFF3395 at 218.160 kb on - strand, within GFF3395 at 218.189 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.250 kb on - strand, within GFF3395 at 218.250 kb on - strand, within GFF3395 at 218.336 kb on + strand, within GFF3395 at 218.336 kb on + strand, within GFF3395 at 218.337 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.462 kb on + strand, within GFF3395 at 218.462 kb on + strand, within GFF3395 at 218.463 kb on - strand, within GFF3395 at 218.477 kb on + strand, within GFF3395 at 218.477 kb on + strand, within GFF3395
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 215,953 + GFF3392 0.83 -0.2 215,953 + GFF3392 0.83 -1.3 215,953 + GFF3392 0.83 -0.5 215,954 - GFF3392 0.83 +0.5 215,954 - GFF3392 0.83 -0.7 215,954 - GFF3392 0.83 +0.5 215,954 - GFF3392 0.83 -0.7 216,134 + -1.1 216,134 + -1.4 216,596 + GFF3393 0.66 -0.2 216,596 + GFF3393 0.66 -0.0 216,597 - GFF3393 0.66 -0.0 216,686 + GFF3393 0.79 +0.6 216,686 + GFF3393 0.79 -0.9 216,687 - GFF3393 0.79 +0.6 216,687 - GFF3393 0.79 +0.1 216,803 + +0.0 216,804 - -0.3 216,804 - -0.0 216,806 + +0.4 216,806 + -0.4 216,806 + -1.0 216,806 + +0.4 216,807 - -0.4 216,807 - +1.5 217,331 - GFF3394 0.66 -1.0 218,054 + GFF3395 0.36 -0.2 218,055 - GFF3395 0.36 -0.4 218,160 - GFF3395 0.47 -0.2 218,189 + GFF3395 0.50 -0.7 218,243 + GFF3395 0.56 +0.5 218,243 + GFF3395 0.56 +0.2 218,243 + GFF3395 0.56 +0.3 218,243 + GFF3395 0.56 +0.9 218,243 + GFF3395 0.56 -2.1 218,243 + GFF3395 0.56 -0.5 218,244 - GFF3395 0.56 +0.5 218,244 - GFF3395 0.56 -0.9 218,244 - GFF3395 0.56 -0.3 218,244 - GFF3395 0.56 -0.2 218,244 - GFF3395 0.56 -0.8 218,244 - GFF3395 0.56 +0.2 218,244 - GFF3395 0.56 -0.2 218,249 + GFF3395 0.57 -0.5 218,249 + GFF3395 0.57 +0.7 218,249 + GFF3395 0.57 -0.2 218,249 + GFF3395 0.57 +0.8 218,250 - GFF3395 0.57 -3.1 218,250 - GFF3395 0.57 -0.3 218,336 + GFF3395 0.66 +0.3 218,336 + GFF3395 0.66 -0.4 218,337 - GFF3395 0.66 -0.5 218,382 - GFF3395 0.71 -0.1 218,382 - GFF3395 0.71 -0.3 218,382 - GFF3395 0.71 -0.1 218,462 + GFF3395 0.79 -0.3 218,462 + GFF3395 0.79 +0.4 218,463 - GFF3395 0.79 +0.8 218,477 + GFF3395 0.81 -0.1 218,477 + GFF3395 0.81 -1.2
Or see this region's nucleotide sequence