Strain Fitness in Variovorax sp. SCN45 around GFF3366

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3364 and GFF3365 overlap by 23 nucleotidesGFF3365 and GFF3366 are separated by 3 nucleotidesGFF3366 and GFF3367 are separated by 70 nucleotidesGFF3367 and GFF3368 are separated by 139 nucleotides GFF3364 - Rhodanese-related sulfurtransferase, at 184,099 to 185,724 GFF3364 GFF3365 - Cell division topological specificity factor MinE, at 185,702 to 185,980 GFF3365 GFF3366 - Septum site-determining protein MinD, at 185,984 to 186,799 GFF3366 GFF3367 - Septum site-determining protein MinC, at 186,870 to 187,643 GFF3367 GFF3368 - Pyrimidine permease, at 187,783 to 189,066 GFF3368 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 185.003 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.253 kb on + strand, within GFF3364at 185.299 kb on + strand, within GFF3364at 185.329 kb on + strand, within GFF3364at 185.329 kb on + strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.472 kb on - strand, within GFF3364at 185.472 kb on - strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.630 kb on - strandat 186.084 kb on + strand, within GFF3366at 186.084 kb on + strand, within GFF3366at 186.084 kb on + strand, within GFF3366at 186.085 kb on - strand, within GFF3366at 186.252 kb on + strand, within GFF3366at 186.252 kb on + strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 187.072 kb on + strand, within GFF3367at 187.072 kb on + strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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185,003 + GFF3364 0.56 -0.3
185,146 + GFF3364 0.64 -1.2
185,146 + GFF3364 0.64 -0.1
185,146 + GFF3364 0.64 +0.5
185,146 + GFF3364 0.64 +0.1
185,146 + GFF3364 0.64 -0.5
185,146 + GFF3364 0.64 -1.7
185,146 + GFF3364 0.64 -0.2
185,146 + GFF3364 0.64 -0.1
185,147 - GFF3364 0.64 +1.0
185,147 - GFF3364 0.64 -0.0
185,147 - GFF3364 0.64 -0.5
185,147 - GFF3364 0.64 +0.8
185,147 - GFF3364 0.64 -1.1
185,253 + GFF3364 0.71 +1.2
185,299 + GFF3364 0.74 +0.0
185,329 + GFF3364 0.76 +0.0
185,329 + GFF3364 0.76 +0.2
185,330 - GFF3364 0.76 -0.0
185,330 - GFF3364 0.76 -1.8
185,330 - GFF3364 0.76 +0.6
185,330 - GFF3364 0.76 -1.2
185,330 - GFF3364 0.76 -0.1
185,330 - GFF3364 0.76 -0.3
185,330 - GFF3364 0.76 +0.6
185,472 - GFF3364 0.84 -0.0
185,472 - GFF3364 0.84 -0.8
185,536 + GFF3364 0.88 +0.2
185,536 + GFF3364 0.88 +1.0
185,536 + GFF3364 0.88 +0.4
185,536 + GFF3364 0.88 -0.1
185,536 + GFF3364 0.88 -0.1
185,536 + GFF3364 0.88 -0.5
185,537 - GFF3364 0.88 +0.2
185,537 - GFF3364 0.88 -0.8
185,537 - GFF3364 0.88 +0.8
185,537 - GFF3364 0.88 -0.1
185,630 - -0.2
186,084 + GFF3366 0.12 -0.0
186,084 + GFF3366 0.12 -0.2
186,084 + GFF3366 0.12 -0.5
186,085 - GFF3366 0.12 -0.8
186,252 + GFF3366 0.33 -0.7
186,252 + GFF3366 0.33 -0.8
186,253 - GFF3366 0.33 -0.8
186,253 - GFF3366 0.33 -1.2
186,253 - GFF3366 0.33 +0.3
186,253 - GFF3366 0.33 -0.5
186,253 - GFF3366 0.33 +1.0
186,453 + GFF3366 0.57 +0.1
186,453 + GFF3366 0.57 -1.0
186,453 + GFF3366 0.57 -0.0
186,453 + GFF3366 0.57 -1.2
186,454 - GFF3366 0.58 -1.4
186,454 - GFF3366 0.58 +0.8
186,454 - GFF3366 0.58 -0.4
186,454 - GFF3366 0.58 +0.3
186,454 - GFF3366 0.58 -0.3
186,627 + GFF3366 0.79 -1.5
186,627 + GFF3366 0.79 -1.4
186,627 + GFF3366 0.79 -1.4
186,627 + GFF3366 0.79 -0.2
186,628 - GFF3366 0.79 +0.1
186,628 - GFF3366 0.79 -0.9
186,628 - GFF3366 0.79 -0.0
186,967 + GFF3367 0.13 -1.0
186,967 + GFF3367 0.13 -0.2
186,967 + GFF3367 0.13 +1.8
186,967 + GFF3367 0.13 -0.2
186,967 + GFF3367 0.13 -0.0
186,968 - GFF3367 0.13 -0.0
186,968 - GFF3367 0.13 -2.1
186,968 - GFF3367 0.13 -0.4
186,968 - GFF3367 0.13 -0.5
186,968 - GFF3367 0.13 -1.0
187,072 + GFF3367 0.26 +0.0
187,072 + GFF3367 0.26 -0.1
187,073 - GFF3367 0.26 -0.4
187,073 - GFF3367 0.26 -0.0
187,073 - GFF3367 0.26 +0.6
187,073 - GFF3367 0.26 -1.6
187,073 - GFF3367 0.26 -0.5
187,154 - GFF3367 0.37 +0.8
187,154 - GFF3367 0.37 -0.9
187,154 - GFF3367 0.37 -0.3
187,154 - GFF3367 0.37 -0.1
187,154 - GFF3367 0.37 -0.5
187,637 - -1.0

Or see this region's nucleotide sequence