Strain Fitness in Variovorax sp. SCN45 around GFF3335

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3333 and GFF3334 are separated by 10 nucleotidesGFF3334 and GFF3335 are separated by 16 nucleotidesGFF3335 and GFF3336 are separated by 0 nucleotides GFF3333 - hypothetical protein, at 158,778 to 158,924 GFF3333 GFF3334 - hypothetical protein, at 158,935 to 159,822 GFF3334 GFF3335 - no description, at 159,839 to 159,997 GFF3335 GFF3336 - tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG, at 159,998 to 161,947 GFF3336 Position (kb) 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 158.968 kb on + strandat 158.968 kb on + strandat 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.260 kb on - strand, within GFF3334at 159.370 kb on + strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.901 kb on + strand, within GFF3335at 159.901 kb on + strand, within GFF3335at 159.902 kb on - strand, within GFF3335at 159.941 kb on + strand, within GFF3335at 159.942 kb on - strand, within GFF3335

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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158,968 + +0.5
158,968 + +0.9
159,151 + GFF3334 0.24 -0.7
159,151 + GFF3334 0.24 -0.3
159,151 + GFF3334 0.24 +0.2
159,151 + GFF3334 0.24 +0.1
159,151 + GFF3334 0.24 +0.4
159,151 + GFF3334 0.24 -0.4
159,151 + GFF3334 0.24 -1.1
159,152 - GFF3334 0.24 -0.1
159,152 - GFF3334 0.24 +0.2
159,152 - GFF3334 0.24 +1.6
159,152 - GFF3334 0.24 -0.4
159,152 - GFF3334 0.24 -0.1
159,152 - GFF3334 0.24 -1.3
159,152 - GFF3334 0.24 -1.4
159,241 + GFF3334 0.34 -0.3
159,241 + GFF3334 0.34 -0.4
159,241 + GFF3334 0.34 +0.9
159,241 + GFF3334 0.34 -0.2
159,241 + GFF3334 0.34 -0.1
159,241 + GFF3334 0.34 +0.3
159,241 + GFF3334 0.34 +0.2
159,241 + GFF3334 0.34 -0.4
159,241 + GFF3334 0.34 +0.0
159,242 - GFF3334 0.35 +0.6
159,242 - GFF3334 0.35 -0.3
159,242 - GFF3334 0.35 -0.2
159,242 - GFF3334 0.35 -0.2
159,242 - GFF3334 0.35 -0.6
159,242 - GFF3334 0.35 -0.1
159,242 - GFF3334 0.35 -0.2
159,242 - GFF3334 0.35 +2.8
159,242 - GFF3334 0.35 +0.4
159,242 - GFF3334 0.35 +0.6
159,242 - GFF3334 0.35 -1.8
159,242 - GFF3334 0.35 -2.2
159,242 - GFF3334 0.35 -0.1
159,242 - GFF3334 0.35 +0.4
159,242 - GFF3334 0.35 -0.5
159,242 - GFF3334 0.35 -0.9
159,242 - GFF3334 0.35 -0.2
159,260 - GFF3334 0.37 -0.9
159,370 + GFF3334 0.49 -2.9
159,371 - GFF3334 0.49 +0.1
159,371 - GFF3334 0.49 +0.3
159,371 - GFF3334 0.49 -0.1
159,508 + GFF3334 0.65 -0.1
159,508 + GFF3334 0.65 +0.1
159,508 + GFF3334 0.65 -0.4
159,508 + GFF3334 0.65 -1.2
159,508 + GFF3334 0.65 -0.9
159,508 + GFF3334 0.65 -1.5
159,508 + GFF3334 0.65 +0.5
159,508 + GFF3334 0.65 -0.4
159,508 + GFF3334 0.65 -1.0
159,508 + GFF3334 0.65 -0.8
159,508 + GFF3334 0.65 -0.1
159,508 + GFF3334 0.65 -1.0
159,508 + GFF3334 0.65 +1.5
159,508 + GFF3334 0.65 +0.3
159,509 - GFF3334 0.65 -0.4
159,509 - GFF3334 0.65 -0.3
159,509 - GFF3334 0.65 +0.8
159,509 - GFF3334 0.65 -0.5
159,509 - GFF3334 0.65 -0.4
159,509 - GFF3334 0.65 +1.2
159,509 - GFF3334 0.65 +0.1
159,509 - GFF3334 0.65 -0.8
159,509 - GFF3334 0.65 +0.2
159,509 - GFF3334 0.65 +1.2
159,509 - GFF3334 0.65 +0.3
159,509 - GFF3334 0.65 -0.5
159,509 - GFF3334 0.65 -0.4
159,901 + GFF3335 0.39 -1.1
159,901 + GFF3335 0.39 -0.0
159,902 - GFF3335 0.40 -0.8
159,941 + GFF3335 0.64 -0.7
159,942 - GFF3335 0.65 -0.7

Or see this region's nucleotide sequence