Strain Fitness in Variovorax sp. SCN45 around GFF326

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF325 and GFF326 are separated by 52 nucleotidesGFF326 and GFF327 are separated by 10 nucleotides GFF325 - Nucleoside ABC transporter, substrate-binding protein, at 357,377 to 358,381 GFF325 GFF326 - Polysaccharide deacetylase, caspase activity, at 358,434 to 361,211 GFF326 GFF327 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 361,222 to 362,199 GFF327 Position (kb) 358 359 360 361 362Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.606 kb on - strand, within GFF325at 357.606 kb on - strand, within GFF325at 357.626 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.795 kb on - strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.205 kb on + strand, within GFF325at 358.205 kb on + strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.214 kb on + strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.379 kb on + strandat 358.379 kb on + strandat 358.379 kb on + strandat 358.379 kb on + strandat 358.379 kb on + strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.960 kb on - strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.038 kb on - strand, within GFF326at 359.038 kb on - strand, within GFF326at 359.061 kb on + strand, within GFF326at 359.061 kb on + strand, within GFF326at 359.061 kb on + strand, within GFF326at 359.062 kb on - strand, within GFF326at 359.106 kb on + strand, within GFF326at 359.107 kb on - strand, within GFF326at 359.107 kb on - strand, within GFF326at 359.107 kb on - strand, within GFF326at 359.271 kb on + strand, within GFF326at 359.271 kb on + strand, within GFF326at 359.859 kb on + strand, within GFF326at 359.898 kb on + strand, within GFF326at 359.898 kb on + strand, within GFF326at 359.898 kb on + strand, within GFF326at 359.898 kb on + strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 359.899 kb on - strand, within GFF326at 360.003 kb on + strand, within GFF326at 360.003 kb on + strand, within GFF326at 360.003 kb on + strand, within GFF326at 360.003 kb on + strand, within GFF326at 360.004 kb on - strand, within GFF326at 360.153 kb on + strand, within GFF326at 360.153 kb on + strand, within GFF326at 360.153 kb on + strand, within GFF326at 360.154 kb on - strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.277 kb on - strand, within GFF326at 360.277 kb on - strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.511 kb on - strand, within GFF326at 360.511 kb on - strand, within GFF326at 360.858 kb on + strand, within GFF326at 360.859 kb on - strand, within GFF326at 360.859 kb on - strand, within GFF326at 360.873 kb on + strand, within GFF326at 360.874 kb on - strand, within GFF326at 360.958 kb on - strandat 360.958 kb on - strandat 361.038 kb on + strandat 361.038 kb on + strandat 361.038 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.098 kb on + strandat 361.098 kb on + strandat 361.098 kb on + strandat 361.099 kb on - strandat 361.099 kb on - strandat 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.325 kb on - strand, within GFF327at 361.666 kb on + strand, within GFF327at 361.667 kb on - strand, within GFF327at 361.667 kb on - strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.975 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 362.050 kb on + strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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357,491 + GFF325 0.11 -0.6
357,491 + GFF325 0.11 -0.3
357,491 + GFF325 0.11 -0.7
357,491 + GFF325 0.11 -0.6
357,491 + GFF325 0.11 -0.2
357,491 + GFF325 0.11 -0.4
357,491 + GFF325 0.11 -0.5
357,491 + GFF325 0.11 -0.1
357,491 + GFF325 0.11 +0.1
357,492 - GFF325 0.11 -0.5
357,492 - GFF325 0.11 -0.2
357,492 - GFF325 0.11 +0.9
357,492 - GFF325 0.11 +1.3
357,492 - GFF325 0.11 -0.2
357,492 - GFF325 0.11 +0.4
357,492 - GFF325 0.11 +0.1
357,492 - GFF325 0.11 -0.5
357,492 - GFF325 0.11 +0.5
357,572 + GFF325 0.19 +0.3
357,572 + GFF325 0.19 +0.5
357,572 + GFF325 0.19 -0.5
357,572 + GFF325 0.19 -1.4
357,572 + GFF325 0.19 +0.3
357,572 + GFF325 0.19 -0.5
357,572 + GFF325 0.19 +0.3
357,573 - GFF325 0.20 -0.5
357,573 - GFF325 0.20 -1.3
357,573 - GFF325 0.20 -0.1
357,573 - GFF325 0.20 -0.3
357,606 - GFF325 0.23 -0.2
357,606 - GFF325 0.23 -0.3
357,626 + GFF325 0.25 -0.7
357,776 + GFF325 0.40 +0.1
357,776 + GFF325 0.40 -0.0
357,776 + GFF325 0.40 +0.2
357,776 + GFF325 0.40 +0.1
357,776 + GFF325 0.40 +0.3
357,776 + GFF325 0.40 -0.7
357,776 + GFF325 0.40 +0.4
357,776 + GFF325 0.40 +0.3
357,776 + GFF325 0.40 +0.3
357,776 + GFF325 0.40 +0.0
357,776 + GFF325 0.40 -0.0
357,776 + GFF325 0.40 +0.3
357,776 + GFF325 0.40 -1.4
357,776 + GFF325 0.40 +1.4
357,776 + GFF325 0.40 -0.5
357,777 - GFF325 0.40 -0.0
357,777 - GFF325 0.40 -0.5
357,777 - GFF325 0.40 -0.6
357,777 - GFF325 0.40 +0.3
357,777 - GFF325 0.40 +0.2
357,777 - GFF325 0.40 +0.7
357,777 - GFF325 0.40 +0.3
357,777 - GFF325 0.40 -0.7
357,777 - GFF325 0.40 +0.0
357,777 - GFF325 0.40 +0.5
357,777 - GFF325 0.40 +0.3
357,777 - GFF325 0.40 +0.4
357,794 + GFF325 0.41 +0.2
357,794 + GFF325 0.41 -0.3
357,794 + GFF325 0.41 -1.1
357,794 + GFF325 0.41 -0.5
357,795 - GFF325 0.42 +0.0
358,022 + GFF325 0.64 -0.9
358,022 + GFF325 0.64 -0.6
358,022 + GFF325 0.64 -0.2
358,022 + GFF325 0.64 -1.2
358,022 + GFF325 0.64 +0.2
358,022 + GFF325 0.64 -0.8
358,022 + GFF325 0.64 +0.2
358,023 - GFF325 0.64 -0.4
358,023 - GFF325 0.64 -0.6
358,023 - GFF325 0.64 +1.3
358,023 - GFF325 0.64 -0.3
358,023 - GFF325 0.64 -0.3
358,023 - GFF325 0.64 -0.5
358,023 - GFF325 0.64 +0.7
358,023 - GFF325 0.64 -0.9
358,205 + GFF325 0.82 -0.3
358,205 + GFF325 0.82 -0.3
358,206 - GFF325 0.82 +0.7
358,206 - GFF325 0.82 -0.1
358,206 - GFF325 0.82 -0.3
358,214 + GFF325 0.83 +0.3
358,215 - GFF325 0.83 +0.0
358,215 - GFF325 0.83 +0.1
358,215 - GFF325 0.83 +0.4
358,215 - GFF325 0.83 +0.3
358,379 + -0.1
358,379 + +0.0
358,379 + +0.6
358,379 + +0.2
358,379 + -1.1
358,380 - -0.2
358,380 - -1.1
358,380 - -0.3
358,380 - +0.6
358,380 - -0.2
358,960 - GFF326 0.19 -0.2
359,037 + GFF326 0.22 -0.1
359,037 + GFF326 0.22 +0.8
359,037 + GFF326 0.22 +0.2
359,037 + GFF326 0.22 +0.0
359,038 - GFF326 0.22 -0.2
359,038 - GFF326 0.22 -0.3
359,061 + GFF326 0.23 -0.1
359,061 + GFF326 0.23 +1.3
359,061 + GFF326 0.23 +0.1
359,062 - GFF326 0.23 +0.0
359,106 + GFF326 0.24 -0.1
359,107 - GFF326 0.24 +0.9
359,107 - GFF326 0.24 -1.2
359,107 - GFF326 0.24 +0.3
359,271 + GFF326 0.30 +0.6
359,271 + GFF326 0.30 -0.6
359,859 + GFF326 0.51 +0.1
359,898 + GFF326 0.53 -1.0
359,898 + GFF326 0.53 -1.5
359,898 + GFF326 0.53 -0.5
359,898 + GFF326 0.53 +0.3
359,899 - GFF326 0.53 -1.2
359,899 - GFF326 0.53 +0.1
359,899 - GFF326 0.53 +0.9
359,899 - GFF326 0.53 +0.3
359,899 - GFF326 0.53 -0.5
359,899 - GFF326 0.53 +0.3
359,899 - GFF326 0.53 -0.7
359,899 - GFF326 0.53 +0.6
359,899 - GFF326 0.53 +1.5
360,003 + GFF326 0.56 -0.2
360,003 + GFF326 0.56 +0.4
360,003 + GFF326 0.56 -0.6
360,003 + GFF326 0.56 -0.3
360,004 - GFF326 0.57 -0.6
360,153 + GFF326 0.62 -0.3
360,153 + GFF326 0.62 +0.3
360,153 + GFF326 0.62 -0.6
360,154 - GFF326 0.62 +0.0
360,276 + GFF326 0.66 +0.5
360,276 + GFF326 0.66 -0.3
360,276 + GFF326 0.66 -0.2
360,276 + GFF326 0.66 -0.3
360,277 - GFF326 0.66 -0.3
360,277 - GFF326 0.66 -0.5
360,510 + GFF326 0.75 -0.2
360,510 + GFF326 0.75 +0.1
360,510 + GFF326 0.75 -0.2
360,510 + GFF326 0.75 +1.0
360,510 + GFF326 0.75 -0.9
360,511 - GFF326 0.75 -0.4
360,511 - GFF326 0.75 -0.3
360,858 + GFF326 0.87 +0.9
360,859 - GFF326 0.87 -0.2
360,859 - GFF326 0.87 -0.1
360,873 + GFF326 0.88 +1.3
360,874 - GFF326 0.88 -0.5
360,958 - -0.3
360,958 - -0.1
361,038 + +0.0
361,038 + -0.3
361,038 + -0.9
361,059 + +0.5
361,059 + +0.1
361,059 + +0.0
361,059 + +0.8
361,059 + -0.0
361,059 + -2.9
361,059 + -1.3
361,059 + -0.6
361,059 + -1.1
361,059 + +0.5
361,059 + -0.3
361,060 - -0.1
361,060 - -0.0
361,060 - -0.1
361,060 - -0.8
361,060 - -0.7
361,060 - -1.5
361,060 - -0.5
361,060 - -0.5
361,060 - -1.3
361,060 - +0.3
361,098 + +0.3
361,098 + -0.3
361,098 + -0.6
361,099 - -0.7
361,099 - +0.4
361,324 + GFF327 0.10 -0.3
361,324 + GFF327 0.10 +0.9
361,324 + GFF327 0.10 +0.0
361,324 + GFF327 0.10 -0.5
361,325 - GFF327 0.11 -0.2
361,666 + GFF327 0.45 +0.5
361,667 - GFF327 0.46 +0.8
361,667 - GFF327 0.46 -0.3
361,708 + GFF327 0.50 -1.7
361,708 + GFF327 0.50 -0.6
361,708 + GFF327 0.50 -0.3
361,709 - GFF327 0.50 -0.4
361,709 - GFF327 0.50 -0.6
361,709 - GFF327 0.50 -0.1
361,975 + GFF327 0.77 +0.9
361,984 + GFF327 0.78 +0.2
361,984 + GFF327 0.78 -0.2
361,984 + GFF327 0.78 -0.4
361,984 + GFF327 0.78 -0.9
361,984 + GFF327 0.78 -0.0
361,984 + GFF327 0.78 +0.2
361,985 - GFF327 0.78 +0.2
361,985 - GFF327 0.78 +0.2
361,985 - GFF327 0.78 +0.9
361,990 + GFF327 0.79 +0.3
361,990 + GFF327 0.79 -0.9
361,990 + GFF327 0.79 +0.1
361,990 + GFF327 0.79 -1.9
361,990 + GFF327 0.79 -0.0
361,990 + GFF327 0.79 +0.8
361,990 + GFF327 0.79 +0.5
361,990 + GFF327 0.79 -1.5
361,990 + GFF327 0.79 -1.1
361,990 + GFF327 0.79 -0.3
361,990 + GFF327 0.79 +0.1
361,990 + GFF327 0.79 -2.1
361,990 + GFF327 0.79 -0.1
361,990 + GFF327 0.79 -0.6
361,990 + GFF327 0.79 +0.9
361,991 - GFF327 0.79 -0.3
361,991 - GFF327 0.79 -0.1
361,991 - GFF327 0.79 +2.6
361,991 - GFF327 0.79 +0.1
361,991 - GFF327 0.79 -0.4
361,991 - GFF327 0.79 +0.5
361,991 - GFF327 0.79 -0.9
361,991 - GFF327 0.79 +0.9
361,991 - GFF327 0.79 +0.5
361,991 - GFF327 0.79 +0.6
361,991 - GFF327 0.79 -0.1
362,050 + GFF327 0.85 +0.1
362,051 - GFF327 0.85 +0.1
362,051 - GFF327 0.85 +0.6
362,068 + GFF327 0.87 +1.3
362,068 + GFF327 0.87 -0.5
362,068 + GFF327 0.87 -1.1
362,068 + GFF327 0.87 -0.1
362,068 + GFF327 0.87 -0.2
362,068 + GFF327 0.87 -1.0
362,068 + GFF327 0.87 +0.7
362,069 - GFF327 0.87 -1.1
362,069 - GFF327 0.87 -0.4
362,069 - GFF327 0.87 +0.7

Or see this region's nucleotide sequence