Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3240 and GFF3241 overlap by 4 nucleotides GFF3241 and GFF3242 are separated by 16 nucleotides GFF3242 and GFF3243 are separated by 152 nucleotides
GFF3240 - hypothetical protein, at 54,617 to 55,237
GFF3240
GFF3241 - hypothetical protein, at 55,234 to 55,698
GFF3241
GFF3242 - FIG00444883: hypothetical protein, at 55,715 to 57,067
GFF3242
GFF3243 - Flavin containing amine oxidoreductase, at 57,220 to 58,851
GFF3243
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.830 kb on + strand, within GFF3240 at 54.830 kb on + strand, within GFF3240 at 55.143 kb on - strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.176 kb on - strand at 55.202 kb on + strand at 55.234 kb on - strand at 55.436 kb on - strand, within GFF3241 at 55.436 kb on - strand, within GFF3241 at 55.436 kb on - strand, within GFF3241 at 55.579 kb on - strand, within GFF3241 at 55.716 kb on + strand at 55.716 kb on + strand at 55.716 kb on + strand at 55.716 kb on + strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.720 kb on + strand at 55.721 kb on - strand at 55.721 kb on - strand at 55.947 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.169 kb on + strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.254 kb on - strand, within GFF3242 at 56.299 kb on - strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 57.089 kb on + strand at 57.285 kb on - strand at 57.533 kb on + strand, within GFF3243 at 57.617 kb on + strand, within GFF3243 at 57.617 kb on + strand, within GFF3243 at 57.618 kb on - strand, within GFF3243 at 57.638 kb on + strand, within GFF3243 at 57.638 kb on + strand, within GFF3243 at 57.639 kb on - strand, within GFF3243
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,830 + GFF3240 0.34 -0.6 54,830 + GFF3240 0.34 -0.3 55,143 - GFF3240 0.85 -0.2 55,163 + GFF3240 0.88 -0.3 55,163 + GFF3240 0.88 -0.4 55,163 + GFF3240 0.88 -0.1 55,163 + GFF3240 0.88 -0.3 55,164 - GFF3240 0.88 +0.2 55,164 - GFF3240 0.88 -0.5 55,164 - GFF3240 0.88 +1.0 55,176 - +0.2 55,202 + -0.4 55,234 - -0.5 55,436 - GFF3241 0.43 -0.1 55,436 - GFF3241 0.43 +0.1 55,436 - GFF3241 0.43 -0.6 55,579 - GFF3241 0.74 -0.1 55,716 + -0.3 55,716 + -0.7 55,716 + +0.2 55,716 + -0.7 55,717 - -0.4 55,717 - +0.5 55,717 - -0.1 55,717 - +0.1 55,717 - +1.8 55,720 + -0.5 55,721 - +0.8 55,721 - -0.3 55,947 + GFF3242 0.17 -0.6 56,001 + GFF3242 0.21 -0.2 56,001 + GFF3242 0.21 -1.8 56,001 + GFF3242 0.21 +0.1 56,001 + GFF3242 0.21 +0.3 56,002 - GFF3242 0.21 +0.9 56,002 - GFF3242 0.21 +0.4 56,002 - GFF3242 0.21 +0.1 56,169 + GFF3242 0.34 +0.8 56,170 - GFF3242 0.34 -0.2 56,170 - GFF3242 0.34 -0.4 56,170 - GFF3242 0.34 -0.8 56,170 - GFF3242 0.34 +0.2 56,254 - GFF3242 0.40 +0.3 56,299 - GFF3242 0.43 -0.8 56,448 + GFF3242 0.54 +0.6 56,448 + GFF3242 0.54 +0.6 56,448 + GFF3242 0.54 -0.4 56,449 - GFF3242 0.54 -0.0 56,449 - GFF3242 0.54 +1.4 56,682 + GFF3242 0.71 -0.5 56,682 + GFF3242 0.71 -0.4 56,682 + GFF3242 0.71 +0.2 56,682 + GFF3242 0.71 +1.2 56,683 - GFF3242 0.72 +0.5 56,683 - GFF3242 0.72 -0.0 56,694 + GFF3242 0.72 +0.6 56,694 + GFF3242 0.72 -0.4 56,695 - GFF3242 0.72 -0.5 56,695 - GFF3242 0.72 +0.3 57,089 + +0.2 57,285 - -0.9 57,533 + GFF3243 0.19 +0.4 57,617 + GFF3243 0.24 -0.7 57,617 + GFF3243 0.24 -0.6 57,618 - GFF3243 0.24 -0.1 57,638 + GFF3243 0.26 -0.2 57,638 + GFF3243 0.26 -0.3 57,639 - GFF3243 0.26 -0.4
Or see this region's nucleotide sequence