Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3214 and GFF3215 overlap by 4 nucleotides GFF3215 and GFF3216 are separated by 188 nucleotides GFF3216 and GFF3217 are separated by 6 nucleotides GFF3217 and GFF3218 are separated by 2 nucleotides
GFF3214 - FIG138928: iron-regulated membrane protein, at 34,423 to 36,090
GFF3214
GFF3215 - no description, at 36,087 to 36,398
GFF3215
GFF3216 - hypothetical protein, at 36,587 to 37,069
GFF3216
GFF3217 - hypothetical protein, at 37,076 to 37,687
GFF3217
GFF3218 - Phage tail fiber, at 37,690 to 38,703
GFF3218
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 35.630 kb on + strand, within GFF3214 at 35.630 kb on + strand, within GFF3214 at 35.630 kb on + strand, within GFF3214 at 35.630 kb on + strand, within GFF3214 at 35.630 kb on + strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.631 kb on - strand, within GFF3214 at 35.655 kb on - strand, within GFF3214 at 35.889 kb on - strand, within GFF3214 at 35.889 kb on - strand, within GFF3214 at 35.987 kb on + strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.988 kb on - strand at 35.988 kb on - strand at 36.379 kb on + strand at 36.565 kb on + strand at 36.639 kb on + strand, within GFF3216 at 36.639 kb on + strand, within GFF3216 at 36.640 kb on - strand, within GFF3216 at 36.640 kb on - strand, within GFF3216 at 36.640 kb on - strand, within GFF3216 at 36.640 kb on - strand, within GFF3216 at 36.702 kb on + strand, within GFF3216 at 36.702 kb on + strand, within GFF3216 at 36.702 kb on + strand, within GFF3216 at 36.703 kb on - strand, within GFF3216 at 36.703 kb on - strand, within GFF3216 at 36.703 kb on - strand, within GFF3216 at 36.846 kb on - strand, within GFF3216 at 37.077 kb on + strand at 37.077 kb on + strand at 37.078 kb on - strand at 37.078 kb on - strand at 37.201 kb on - strand, within GFF3217 at 37.284 kb on + strand, within GFF3217 at 37.284 kb on + strand, within GFF3217 at 37.284 kb on + strand, within GFF3217 at 37.285 kb on - strand, within GFF3217 at 37.285 kb on - strand, within GFF3217 at 37.285 kb on - strand, within GFF3217 at 37.318 kb on - strand, within GFF3217 at 37.391 kb on + strand, within GFF3217 at 37.391 kb on + strand, within GFF3217 at 37.391 kb on + strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.448 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.521 kb on + strand, within GFF3217 at 37.521 kb on + strand, within GFF3217 at 37.641 kb on + strand at 37.642 kb on + strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.665 kb on + strand at 37.666 kb on - strand at 37.694 kb on + strand at 37.695 kb on - strand at 37.712 kb on + strand at 37.712 kb on + strand at 37.713 kb on - strand at 37.808 kb on + strand, within GFF3218 at 37.808 kb on + strand, within GFF3218 at 37.808 kb on + strand, within GFF3218 at 37.808 kb on + strand, within GFF3218 at 37.809 kb on - strand, within GFF3218 at 38.018 kb on + strand, within GFF3218 at 38.018 kb on + strand, within GFF3218 at 38.019 kb on - strand, within GFF3218 at 38.019 kb on - strand, within GFF3218 at 38.019 kb on - strand, within GFF3218
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,630 + GFF3214 0.72 -0.3 35,630 + GFF3214 0.72 +0.2 35,630 + GFF3214 0.72 +0.1 35,630 + GFF3214 0.72 -0.2 35,630 + GFF3214 0.72 +0.2 35,631 - GFF3214 0.72 -0.5 35,631 - GFF3214 0.72 +0.5 35,631 - GFF3214 0.72 -0.7 35,631 - GFF3214 0.72 -0.6 35,631 - GFF3214 0.72 -0.2 35,631 - GFF3214 0.72 +0.0 35,631 - GFF3214 0.72 -0.0 35,631 - GFF3214 0.72 -0.7 35,631 - GFF3214 0.72 +0.7 35,631 - GFF3214 0.72 -0.2 35,631 - GFF3214 0.72 -1.5 35,631 - GFF3214 0.72 +0.1 35,631 - GFF3214 0.72 +0.2 35,655 - GFF3214 0.74 -0.6 35,889 - GFF3214 0.88 -0.1 35,889 - GFF3214 0.88 +0.5 35,987 + -0.7 35,987 + -0.3 35,987 + -0.4 35,988 - +1.5 35,988 - -0.4 36,379 + +0.9 36,565 + +0.2 36,639 + GFF3216 0.11 -0.5 36,639 + GFF3216 0.11 +0.2 36,640 - GFF3216 0.11 +0.2 36,640 - GFF3216 0.11 -0.6 36,640 - GFF3216 0.11 +1.8 36,640 - GFF3216 0.11 +0.5 36,702 + GFF3216 0.24 -1.0 36,702 + GFF3216 0.24 -0.4 36,702 + GFF3216 0.24 -1.2 36,703 - GFF3216 0.24 +1.1 36,703 - GFF3216 0.24 +0.6 36,703 - GFF3216 0.24 -0.3 36,846 - GFF3216 0.54 +2.8 37,077 + -0.2 37,077 + +1.5 37,078 - -0.3 37,078 - -0.4 37,201 - GFF3217 0.20 +1.4 37,284 + GFF3217 0.34 -0.6 37,284 + GFF3217 0.34 -0.1 37,284 + GFF3217 0.34 -1.4 37,285 - GFF3217 0.34 -0.3 37,285 - GFF3217 0.34 +0.8 37,285 - GFF3217 0.34 -0.3 37,318 - GFF3217 0.40 -0.0 37,391 + GFF3217 0.51 -0.5 37,391 + GFF3217 0.51 +0.0 37,391 + GFF3217 0.51 -0.1 37,392 - GFF3217 0.52 -0.8 37,392 - GFF3217 0.52 -0.2 37,392 - GFF3217 0.52 -0.6 37,392 - GFF3217 0.52 -0.6 37,392 - GFF3217 0.52 -1.1 37,392 - GFF3217 0.52 -1.5 37,448 + GFF3217 0.61 -1.0 37,501 + GFF3217 0.69 -0.6 37,501 + GFF3217 0.69 -1.8 37,501 + GFF3217 0.69 +0.1 37,501 + GFF3217 0.69 +0.3 37,501 + GFF3217 0.69 -1.5 37,502 - GFF3217 0.70 -0.0 37,502 - GFF3217 0.70 -1.2 37,502 - GFF3217 0.70 -0.2 37,502 - GFF3217 0.70 -0.2 37,502 - GFF3217 0.70 -0.1 37,502 - GFF3217 0.70 -0.9 37,502 - GFF3217 0.70 -0.2 37,521 + GFF3217 0.73 -0.2 37,521 + GFF3217 0.73 -0.8 37,641 + -0.5 37,642 + +1.2 37,642 - -0.3 37,642 - -0.0 37,642 - +0.3 37,642 - -0.5 37,642 - -0.3 37,665 + -0.9 37,666 - -0.2 37,694 + +0.5 37,695 - -0.7 37,712 + +0.6 37,712 + +1.2 37,713 - -1.0 37,808 + GFF3218 0.12 -0.3 37,808 + GFF3218 0.12 +0.6 37,808 + GFF3218 0.12 -0.2 37,808 + GFF3218 0.12 -0.3 37,809 - GFF3218 0.12 +0.1 38,018 + GFF3218 0.32 -0.6 38,018 + GFF3218 0.32 -0.2 38,019 - GFF3218 0.32 -0.1 38,019 - GFF3218 0.32 -0.4 38,019 - GFF3218 0.32 -0.4
Or see this region's nucleotide sequence