Strain Fitness in Variovorax sp. SCN45 around GFF3214

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3212 and GFF3213 are separated by 10 nucleotidesGFF3213 and GFF3214 overlap by 1 nucleotidesGFF3214 and GFF3215 overlap by 4 nucleotidesGFF3215 and GFF3216 are separated by 188 nucleotidesGFF3216 and GFF3217 are separated by 6 nucleotides GFF3212 - Oxidoreductase, at 32,977 to 34,044 GFF3212 GFF3213 - no description, at 34,055 to 34,423 GFF3213 GFF3214 - FIG138928: iron-regulated membrane protein, at 34,423 to 36,090 GFF3214 GFF3215 - no description, at 36,087 to 36,398 GFF3215 GFF3216 - hypothetical protein, at 36,587 to 37,069 GFF3216 GFF3217 - hypothetical protein, at 37,076 to 37,687 GFF3217 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2 3at 33.433 kb on + strand, within GFF3212at 33.434 kb on - strand, within GFF3212at 33.643 kb on + strand, within GFF3212at 33.643 kb on + strand, within GFF3212at 33.644 kb on - strand, within GFF3212at 33.644 kb on - strand, within GFF3212at 33.644 kb on - strand, within GFF3212at 34.086 kb on + strandat 34.087 kb on - strandat 34.087 kb on - strandat 34.087 kb on - strandat 34.904 kb on - strand, within GFF3214at 34.904 kb on - strand, within GFF3214at 35.141 kb on + strand, within GFF3214at 35.141 kb on + strand, within GFF3214at 35.372 kb on + strand, within GFF3214at 35.372 kb on + strand, within GFF3214at 35.372 kb on + strand, within GFF3214at 35.373 kb on - strand, within GFF3214at 35.373 kb on - strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.399 kb on + strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.400 kb on - strand, within GFF3214at 35.429 kb on + strand, within GFF3214at 35.429 kb on + strand, within GFF3214at 35.429 kb on + strand, within GFF3214at 35.429 kb on + strand, within GFF3214at 35.429 kb on + strand, within GFF3214at 35.430 kb on - strand, within GFF3214at 35.430 kb on - strand, within GFF3214at 35.447 kb on + strand, within GFF3214at 35.448 kb on - strand, within GFF3214at 35.448 kb on - strand, within GFF3214at 35.630 kb on + strand, within GFF3214at 35.630 kb on + strand, within GFF3214at 35.630 kb on + strand, within GFF3214at 35.630 kb on + strand, within GFF3214at 35.630 kb on + strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.631 kb on - strand, within GFF3214at 35.655 kb on - strand, within GFF3214at 35.889 kb on - strand, within GFF3214at 35.889 kb on - strand, within GFF3214at 35.987 kb on + strandat 35.987 kb on + strandat 35.987 kb on + strandat 35.988 kb on - strandat 35.988 kb on - strandat 36.379 kb on + strandat 36.565 kb on + strandat 36.639 kb on + strand, within GFF3216at 36.639 kb on + strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.702 kb on + strand, within GFF3216at 36.702 kb on + strand, within GFF3216at 36.702 kb on + strand, within GFF3216at 36.703 kb on - strand, within GFF3216at 36.703 kb on - strand, within GFF3216at 36.703 kb on - strand, within GFF3216at 36.846 kb on - strand, within GFF3216at 37.077 kb on + strandat 37.077 kb on + strandat 37.078 kb on - strandat 37.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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33,433 + GFF3212 0.43 -0.4
33,434 - GFF3212 0.43 -1.0
33,643 + GFF3212 0.62 -0.3
33,643 + GFF3212 0.62 -0.7
33,644 - GFF3212 0.62 -0.1
33,644 - GFF3212 0.62 +0.1
33,644 - GFF3212 0.62 -0.4
34,086 + -0.2
34,087 - -0.7
34,087 - -0.2
34,087 - +1.8
34,904 - GFF3214 0.29 -0.5
34,904 - GFF3214 0.29 -1.5
35,141 + GFF3214 0.43 -0.0
35,141 + GFF3214 0.43 -1.4
35,372 + GFF3214 0.57 -1.1
35,372 + GFF3214 0.57 -1.0
35,372 + GFF3214 0.57 -1.8
35,373 - GFF3214 0.57 -0.0
35,373 - GFF3214 0.57 -0.4
35,399 + GFF3214 0.59 -0.2
35,399 + GFF3214 0.59 -0.6
35,399 + GFF3214 0.59 +0.3
35,399 + GFF3214 0.59 +0.3
35,399 + GFF3214 0.59 -0.7
35,399 + GFF3214 0.59 -0.3
35,399 + GFF3214 0.59 -1.4
35,399 + GFF3214 0.59 -0.6
35,399 + GFF3214 0.59 +1.2
35,400 - GFF3214 0.59 +0.2
35,400 - GFF3214 0.59 -0.2
35,400 - GFF3214 0.59 +0.0
35,400 - GFF3214 0.59 -0.7
35,400 - GFF3214 0.59 +0.4
35,400 - GFF3214 0.59 +0.2
35,400 - GFF3214 0.59 +0.1
35,429 + GFF3214 0.60 -0.8
35,429 + GFF3214 0.60 -1.5
35,429 + GFF3214 0.60 -1.0
35,429 + GFF3214 0.60 -0.0
35,429 + GFF3214 0.60 -0.1
35,430 - GFF3214 0.60 +0.1
35,430 - GFF3214 0.60 -0.6
35,447 + GFF3214 0.61 +0.0
35,448 - GFF3214 0.61 -0.7
35,448 - GFF3214 0.61 -0.1
35,630 + GFF3214 0.72 -0.3
35,630 + GFF3214 0.72 +0.2
35,630 + GFF3214 0.72 +0.1
35,630 + GFF3214 0.72 -0.2
35,630 + GFF3214 0.72 +0.2
35,631 - GFF3214 0.72 -0.5
35,631 - GFF3214 0.72 +0.5
35,631 - GFF3214 0.72 -0.7
35,631 - GFF3214 0.72 -0.6
35,631 - GFF3214 0.72 -0.2
35,631 - GFF3214 0.72 +0.0
35,631 - GFF3214 0.72 -0.0
35,631 - GFF3214 0.72 -0.7
35,631 - GFF3214 0.72 +0.7
35,631 - GFF3214 0.72 -0.2
35,631 - GFF3214 0.72 -1.5
35,631 - GFF3214 0.72 +0.1
35,631 - GFF3214 0.72 +0.2
35,655 - GFF3214 0.74 -0.6
35,889 - GFF3214 0.88 -0.1
35,889 - GFF3214 0.88 +0.5
35,987 + -0.7
35,987 + -0.3
35,987 + -0.4
35,988 - +1.5
35,988 - -0.4
36,379 + +0.9
36,565 + +0.2
36,639 + GFF3216 0.11 -0.5
36,639 + GFF3216 0.11 +0.2
36,640 - GFF3216 0.11 +0.2
36,640 - GFF3216 0.11 -0.6
36,640 - GFF3216 0.11 +1.8
36,640 - GFF3216 0.11 +0.5
36,702 + GFF3216 0.24 -1.0
36,702 + GFF3216 0.24 -0.4
36,702 + GFF3216 0.24 -1.2
36,703 - GFF3216 0.24 +1.1
36,703 - GFF3216 0.24 +0.6
36,703 - GFF3216 0.24 -0.3
36,846 - GFF3216 0.54 +2.8
37,077 + -0.2
37,077 + +1.5
37,078 - -0.3
37,078 - -0.4

Or see this region's nucleotide sequence