Strain Fitness in Variovorax sp. SCN45 around GFF3210

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3209 and GFF3210 are separated by 22 nucleotidesGFF3210 and GFF3211 are separated by 31 nucleotides GFF3209 - no description, at 28,684 to 30,399 GFF3209 GFF3210 - hypothetical protein, at 30,422 to 31,573 GFF3210 GFF3211 - no description, at 31,605 to 32,444 GFF3211 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.873 kb on - strand, within GFF3209at 29.893 kb on + strand, within GFF3209at 29.893 kb on + strand, within GFF3209at 29.893 kb on + strand, within GFF3209at 29.894 kb on - strand, within GFF3209at 29.894 kb on - strand, within GFF3209at 29.894 kb on - strand, within GFF3209at 29.927 kb on + strand, within GFF3209at 29.999 kb on + strand, within GFF3209at 30.000 kb on - strand, within GFF3209at 30.000 kb on - strand, within GFF3209at 30.046 kb on - strand, within GFF3209at 30.125 kb on + strand, within GFF3209at 30.125 kb on + strand, within GFF3209at 30.126 kb on - strand, within GFF3209at 30.126 kb on - strand, within GFF3209at 30.401 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.464 kb on + strandat 30.465 kb on - strandat 30.585 kb on + strand, within GFF3210at 30.586 kb on - strand, within GFF3210at 30.586 kb on - strand, within GFF3210at 30.586 kb on - strand, within GFF3210at 30.791 kb on + strand, within GFF3210at 30.791 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 31.094 kb on + strand, within GFF3210at 31.260 kb on - strand, within GFF3210at 31.260 kb on - strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.307 kb on - strand, within GFF3210at 31.404 kb on + strand, within GFF3210at 31.405 kb on - strand, within GFF3210at 31.405 kb on - strand, within GFF3210at 31.405 kb on - strand, within GFF3210at 31.466 kb on + strandat 31.466 kb on + strandat 31.466 kb on + strandat 31.467 kb on - strandat 31.467 kb on - strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.572 kb on - strandat 31.572 kb on - strandat 31.572 kb on - strandat 31.572 kb on - strandat 31.656 kb on + strandat 31.790 kb on + strand, within GFF3211at 31.790 kb on + strand, within GFF3211at 31.790 kb on + strand, within GFF3211at 31.866 kb on + strand, within GFF3211at 31.866 kb on + strand, within GFF3211at 31.867 kb on - strand, within GFF3211at 31.876 kb on - strand, within GFF3211at 31.933 kb on + strand, within GFF3211at 31.933 kb on + strand, within GFF3211at 32.031 kb on + strand, within GFF3211at 32.031 kb on + strand, within GFF3211at 32.031 kb on + strand, within GFF3211at 32.032 kb on - strand, within GFF3211at 32.035 kb on - strand, within GFF3211at 32.073 kb on + strand, within GFF3211at 32.074 kb on - strand, within GFF3211at 32.083 kb on + strand, within GFF3211at 32.084 kb on - strand, within GFF3211at 32.084 kb on - strand, within GFF3211at 32.117 kb on - strand, within GFF3211at 32.135 kb on + strand, within GFF3211at 32.197 kb on - strand, within GFF3211at 32.421 kb on + strandat 32.421 kb on + strandat 32.421 kb on + strandat 32.436 kb on + strandat 32.436 kb on + strandat 32.437 kb on - strandat 32.437 kb on - strandat 32.452 kb on + strandat 32.508 kb on + strandat 32.508 kb on + strandat 32.508 kb on + strandat 32.566 kb on + strandat 32.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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29,873 - GFF3209 0.69 +2.0
29,893 + GFF3209 0.70 -1.0
29,893 + GFF3209 0.70 -2.2
29,893 + GFF3209 0.70 -0.7
29,894 - GFF3209 0.71 -0.2
29,894 - GFF3209 0.71 -0.3
29,894 - GFF3209 0.71 -0.3
29,927 + GFF3209 0.72 -2.9
29,999 + GFF3209 0.77 +0.3
30,000 - GFF3209 0.77 +1.8
30,000 - GFF3209 0.77 -0.2
30,046 - GFF3209 0.79 -0.2
30,125 + GFF3209 0.84 -0.1
30,125 + GFF3209 0.84 +0.5
30,126 - GFF3209 0.84 +0.1
30,126 - GFF3209 0.84 -1.0
30,401 + -1.1
30,431 + +0.6
30,431 + -0.5
30,431 + -0.8
30,431 + +0.4
30,431 + -0.1
30,431 + -0.8
30,431 + -0.8
30,432 - -0.3
30,432 - -0.9
30,432 - -0.5
30,432 - -0.1
30,432 - -0.5
30,464 + +0.1
30,465 - -0.2
30,585 + GFF3210 0.14 -0.8
30,586 - GFF3210 0.14 +1.0
30,586 - GFF3210 0.14 +0.2
30,586 - GFF3210 0.14 +0.6
30,791 + GFF3210 0.32 +0.2
30,791 + GFF3210 0.32 +1.2
30,904 + GFF3210 0.42 -0.2
30,904 + GFF3210 0.42 +0.1
30,904 + GFF3210 0.42 +0.4
30,904 + GFF3210 0.42 -0.7
30,905 - GFF3210 0.42 -0.5
30,905 - GFF3210 0.42 -0.6
30,905 - GFF3210 0.42 -1.8
30,905 - GFF3210 0.42 -0.3
30,905 - GFF3210 0.42 -0.2
30,905 - GFF3210 0.42 -1.5
30,908 + GFF3210 0.42 -0.7
30,908 + GFF3210 0.42 -0.3
30,908 + GFF3210 0.42 -0.7
30,908 + GFF3210 0.42 -1.6
30,909 - GFF3210 0.42 -0.1
30,909 - GFF3210 0.42 +0.8
30,909 - GFF3210 0.42 -0.3
30,909 - GFF3210 0.42 -0.2
30,909 - GFF3210 0.42 +0.1
30,970 + GFF3210 0.48 +0.1
30,970 + GFF3210 0.48 -0.0
30,970 + GFF3210 0.48 -0.6
30,970 + GFF3210 0.48 -0.9
30,970 + GFF3210 0.48 -0.5
30,971 - GFF3210 0.48 +1.2
30,971 - GFF3210 0.48 -1.2
30,971 - GFF3210 0.48 -0.2
31,094 + GFF3210 0.58 +0.7
31,260 - GFF3210 0.73 -0.3
31,260 - GFF3210 0.73 +0.0
31,283 + GFF3210 0.75 +0.6
31,283 + GFF3210 0.75 -0.6
31,283 + GFF3210 0.75 -0.1
31,283 + GFF3210 0.75 +0.3
31,284 - GFF3210 0.75 -0.7
31,284 - GFF3210 0.75 -0.2
31,284 - GFF3210 0.75 -1.5
31,284 - GFF3210 0.75 +1.5
31,286 + GFF3210 0.75 -0.4
31,286 + GFF3210 0.75 -0.2
31,286 + GFF3210 0.75 -1.6
31,286 + GFF3210 0.75 -0.7
31,286 + GFF3210 0.75 -1.2
31,286 + GFF3210 0.75 -0.5
31,286 + GFF3210 0.75 +0.0
31,286 + GFF3210 0.75 +0.2
31,286 + GFF3210 0.75 -1.7
31,286 + GFF3210 0.75 -1.2
31,286 + GFF3210 0.75 -2.2
31,286 + GFF3210 0.75 -0.4
31,287 - GFF3210 0.75 -0.6
31,287 - GFF3210 0.75 +0.7
31,287 - GFF3210 0.75 -0.3
31,287 - GFF3210 0.75 -1.1
31,307 - GFF3210 0.77 +1.1
31,404 + GFF3210 0.85 -0.4
31,405 - GFF3210 0.85 +0.7
31,405 - GFF3210 0.85 -0.2
31,405 - GFF3210 0.85 -0.8
31,466 + -0.8
31,466 + -0.4
31,466 + -0.7
31,467 - -0.1
31,467 - -0.6
31,571 + -0.7
31,571 + -0.3
31,571 + -0.5
31,571 + -0.8
31,571 + +0.8
31,571 + -0.4
31,572 - -0.9
31,572 - -1.9
31,572 - +0.0
31,572 - -1.4
31,656 + -1.3
31,790 + GFF3211 0.22 +0.9
31,790 + GFF3211 0.22 -0.9
31,790 + GFF3211 0.22 -0.6
31,866 + GFF3211 0.31 +0.4
31,866 + GFF3211 0.31 -0.6
31,867 - GFF3211 0.31 -1.1
31,876 - GFF3211 0.32 +0.3
31,933 + GFF3211 0.39 +0.1
31,933 + GFF3211 0.39 +0.5
32,031 + GFF3211 0.51 +1.1
32,031 + GFF3211 0.51 +1.0
32,031 + GFF3211 0.51 +0.5
32,032 - GFF3211 0.51 -0.4
32,035 - GFF3211 0.51 -0.8
32,073 + GFF3211 0.56 +0.2
32,074 - GFF3211 0.56 -0.4
32,083 + GFF3211 0.57 +0.7
32,084 - GFF3211 0.57 +1.1
32,084 - GFF3211 0.57 -0.1
32,117 - GFF3211 0.61 -0.7
32,135 + GFF3211 0.63 +0.5
32,197 - GFF3211 0.70 -0.1
32,421 + -0.5
32,421 + -0.7
32,421 + +1.8
32,436 + -0.0
32,436 + -0.1
32,437 - -0.1
32,437 - +0.6
32,452 + -0.3
32,508 + +0.5
32,508 + +0.4
32,508 + +0.3
32,566 + +0.7
32,566 + -0.3

Or see this region's nucleotide sequence