Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3193 and GFF3194 are separated by 296 nucleotides GFF3194 and GFF3195 overlap by 4 nucleotides GFF3195 and GFF3196 are separated by 557 nucleotides
GFF3193 - no description, at 9,978 to 10,724
GFF3193
GFF3194 - no description, at 11,021 to 11,638
GFF3194
GFF3195 - hypothetical protein, at 11,635 to 13,614
GFF3195
GFF3196 - Metallophosphoesterase, at 14,172 to 15,098
GFF3196
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 10.641 kb on + strand, within GFF3193 at 10.641 kb on + strand, within GFF3193 at 10.642 kb on - strand, within GFF3193 at 10.642 kb on - strand, within GFF3193 at 10.663 kb on + strand at 10.669 kb on + strand at 10.669 kb on + strand at 10.669 kb on + strand at 10.670 kb on - strand at 10.746 kb on + strand at 10.746 kb on + strand at 10.746 kb on + strand at 10.928 kb on + strand at 10.929 kb on - strand at 10.938 kb on + strand at 10.976 kb on + strand at 10.978 kb on + strand at 10.978 kb on + strand at 10.978 kb on + strand at 10.978 kb on + strand at 10.979 kb on - strand at 10.979 kb on - strand at 10.979 kb on - strand at 10.979 kb on - strand at 11.017 kb on + strand at 11.018 kb on - strand at 11.018 kb on - strand at 11.018 kb on - strand at 11.079 kb on + strand at 11.079 kb on + strand at 11.080 kb on - strand at 11.080 kb on - strand at 11.084 kb on + strand, within GFF3194 at 11.084 kb on + strand, within GFF3194 at 11.135 kb on - strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.161 kb on - strand, within GFF3194 at 11.445 kb on + strand, within GFF3194 at 11.445 kb on + strand, within GFF3194 at 11.446 kb on - strand, within GFF3194 at 11.446 kb on - strand, within GFF3194 at 11.514 kb on + strand, within GFF3194 at 11.514 kb on + strand, within GFF3194 at 11.514 kb on + strand, within GFF3194 at 11.516 kb on + strand, within GFF3194 at 11.517 kb on - strand, within GFF3194 at 11.517 kb on - strand, within GFF3194 at 11.517 kb on - strand, within GFF3194 at 11.554 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.681 kb on + strand at 11.681 kb on + strand at 11.681 kb on + strand at 11.682 kb on - strand at 11.682 kb on - strand at 11.814 kb on + strand at 11.815 kb on - strand at 11.815 kb on - strand at 11.885 kb on + strand, within GFF3195 at 11.913 kb on + strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.928 kb on + strand, within GFF3195 at 11.950 kb on + strand, within GFF3195 at 11.950 kb on + strand, within GFF3195 at 11.950 kb on + strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 12.056 kb on - strand, within GFF3195 at 12.056 kb on - strand, within GFF3195 at 12.094 kb on - strand, within GFF3195 at 12.094 kb on - strand, within GFF3195 at 12.168 kb on - strand, within GFF3195 at 12.212 kb on + strand, within GFF3195 at 12.212 kb on + strand, within GFF3195 at 12.212 kb on + strand, within GFF3195 at 12.213 kb on - strand, within GFF3195 at 12.213 kb on - strand, within GFF3195 at 12.230 kb on + strand, within GFF3195 at 12.231 kb on - strand, within GFF3195 at 12.231 kb on - strand, within GFF3195 at 12.231 kb on - strand, within GFF3195 at 12.295 kb on + strand, within GFF3195 at 12.295 kb on + strand, within GFF3195 at 12.296 kb on - strand, within GFF3195 at 12.296 kb on - strand, within GFF3195 at 12.322 kb on + strand, within GFF3195 at 12.380 kb on + strand, within GFF3195 at 12.380 kb on + strand, within GFF3195 at 12.380 kb on + strand, within GFF3195 at 12.381 kb on - strand, within GFF3195 at 12.424 kb on - strand, within GFF3195 at 12.598 kb on + strand, within GFF3195 at 12.598 kb on + strand, within GFF3195 at 12.599 kb on - strand, within GFF3195 at 12.599 kb on - strand, within GFF3195 at 12.716 kb on + strand, within GFF3195 at 12.716 kb on + strand, within GFF3195 at 12.717 kb on - strand, within GFF3195 at 12.717 kb on - strand, within GFF3195 at 12.842 kb on + strand, within GFF3195 at 12.843 kb on - strand, within GFF3195 at 12.843 kb on - strand, within GFF3195 at 12.843 kb on - strand, within GFF3195 at 12.915 kb on + strand, within GFF3195 at 12.915 kb on + strand, within GFF3195 at 12.915 kb on + strand, within GFF3195 at 12.925 kb on + strand, within GFF3195 at 12.925 kb on + strand, within GFF3195 at 12.925 kb on + strand, within GFF3195 at 12.926 kb on - strand, within GFF3195 at 12.926 kb on - strand, within GFF3195 at 12.934 kb on - strand, within GFF3195 at 12.934 kb on - strand, within GFF3195 at 12.941 kb on + strand, within GFF3195 at 13.037 kb on + strand, within GFF3195 at 13.037 kb on + strand, within GFF3195 at 13.037 kb on + strand, within GFF3195 at 13.038 kb on - strand, within GFF3195 at 13.038 kb on - strand, within GFF3195 at 13.038 kb on - strand, within GFF3195 at 13.219 kb on + strand, within GFF3195 at 13.219 kb on + strand, within GFF3195 at 13.220 kb on - strand, within GFF3195 at 13.289 kb on + strand, within GFF3195 at 13.290 kb on - strand, within GFF3195 at 13.290 kb on - strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.458 kb on - strand at 13.458 kb on - strand at 13.468 kb on - strand at 13.468 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.560 kb on - strand at 13.605 kb on + strand at 13.606 kb on - strand at 13.606 kb on - strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.635 kb on - strand at 13.732 kb on + strand at 13.733 kb on - strand at 13.733 kb on - strand at 13.735 kb on + strand at 13.812 kb on + strand at 13.812 kb on + strand at 13.813 kb on - strand at 13.823 kb on + strand at 13.823 kb on + strand at 13.823 kb on + strand at 13.824 kb on - strand at 13.824 kb on - strand at 13.873 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.926 kb on + strand at 13.927 kb on - strand at 13.927 kb on - strand at 13.927 kb on - strand at 13.936 kb on + strand at 13.972 kb on - strand at 13.972 kb on - strand at 13.972 kb on - strand at 13.972 kb on - strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.338 kb on + strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.421 kb on + strand, within GFF3196 at 14.490 kb on + strand, within GFF3196 at 14.491 kb on - strand, within GFF3196 at 14.491 kb on - strand, within GFF3196
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 10,641 + GFF3193 0.89 +0.2 10,641 + GFF3193 0.89 -0.4 10,642 - GFF3193 0.89 +0.3 10,642 - GFF3193 0.89 -1.0 10,663 + -0.4 10,669 + -0.2 10,669 + -1.1 10,669 + +0.5 10,670 - +0.1 10,746 + +0.1 10,746 + -0.5 10,746 + -0.1 10,928 + -0.6 10,929 - -0.4 10,938 + +0.1 10,976 + -0.0 10,978 + +0.5 10,978 + -0.7 10,978 + -0.6 10,978 + +0.5 10,979 - -1.0 10,979 - +0.3 10,979 - +0.1 10,979 - -0.6 11,017 + +0.1 11,018 - -0.4 11,018 - -0.6 11,018 - -0.2 11,079 + +0.1 11,079 + -0.5 11,080 - +0.6 11,080 - -0.2 11,084 + GFF3194 0.10 +0.4 11,084 + GFF3194 0.10 -0.6 11,135 - GFF3194 0.18 -0.7 11,141 + GFF3194 0.19 +0.1 11,141 + GFF3194 0.19 -0.5 11,141 + GFF3194 0.19 -0.4 11,141 + GFF3194 0.19 -0.6 11,161 - GFF3194 0.23 -0.8 11,445 + GFF3194 0.69 -1.5 11,445 + GFF3194 0.69 +0.2 11,446 - GFF3194 0.69 -0.3 11,446 - GFF3194 0.69 -0.1 11,514 + GFF3194 0.80 -0.3 11,514 + GFF3194 0.80 -0.1 11,514 + GFF3194 0.80 +0.2 11,516 + GFF3194 0.80 -0.2 11,517 - GFF3194 0.80 +0.1 11,517 - GFF3194 0.80 -0.5 11,517 - GFF3194 0.80 +1.5 11,554 + GFF3194 0.86 -0.8 11,558 + GFF3194 0.87 -1.9 11,558 + GFF3194 0.87 -0.4 11,558 + GFF3194 0.87 -0.4 11,558 + GFF3194 0.87 -0.2 11,558 + GFF3194 0.87 -0.5 11,558 + GFF3194 0.87 -0.5 11,559 - GFF3194 0.87 +0.3 11,559 - GFF3194 0.87 -0.1 11,559 - GFF3194 0.87 -0.5 11,559 - GFF3194 0.87 -0.1 11,681 + +0.0 11,681 + +0.2 11,681 + -0.4 11,682 - -0.4 11,682 - -1.4 11,814 + -0.5 11,815 - -0.3 11,815 - -0.3 11,885 + GFF3195 0.13 -1.2 11,913 + GFF3195 0.14 +0.5 11,914 - GFF3195 0.14 -0.2 11,914 - GFF3195 0.14 +1.1 11,914 - GFF3195 0.14 -2.6 11,914 - GFF3195 0.14 -0.5 11,914 - GFF3195 0.14 -1.5 11,928 + GFF3195 0.15 -0.6 11,950 + GFF3195 0.16 -0.3 11,950 + GFF3195 0.16 -0.3 11,950 + GFF3195 0.16 -0.4 11,951 - GFF3195 0.16 +1.1 11,951 - GFF3195 0.16 -0.5 11,951 - GFF3195 0.16 -0.3 11,951 - GFF3195 0.16 -0.1 11,951 - GFF3195 0.16 -0.3 12,056 - GFF3195 0.21 +0.2 12,056 - GFF3195 0.21 +0.1 12,094 - GFF3195 0.23 -0.2 12,094 - GFF3195 0.23 -1.2 12,168 - GFF3195 0.27 -0.7 12,212 + GFF3195 0.29 -0.7 12,212 + GFF3195 0.29 -0.8 12,212 + GFF3195 0.29 +0.8 12,213 - GFF3195 0.29 -1.9 12,213 - GFF3195 0.29 +0.9 12,230 + GFF3195 0.30 +0.4 12,231 - GFF3195 0.30 -0.9 12,231 - GFF3195 0.30 -0.4 12,231 - GFF3195 0.30 -0.6 12,295 + GFF3195 0.33 -0.5 12,295 + GFF3195 0.33 -0.8 12,296 - GFF3195 0.33 +0.2 12,296 - GFF3195 0.33 -0.2 12,322 + GFF3195 0.35 -0.2 12,380 + GFF3195 0.38 +0.8 12,380 + GFF3195 0.38 +1.8 12,380 + GFF3195 0.38 +0.1 12,381 - GFF3195 0.38 -1.8 12,424 - GFF3195 0.40 +1.3 12,598 + GFF3195 0.49 -0.8 12,598 + GFF3195 0.49 +0.3 12,599 - GFF3195 0.49 -0.4 12,599 - GFF3195 0.49 +0.3 12,716 + GFF3195 0.55 -0.1 12,716 + GFF3195 0.55 -0.9 12,717 - GFF3195 0.55 -0.3 12,717 - GFF3195 0.55 +0.6 12,842 + GFF3195 0.61 +0.1 12,843 - GFF3195 0.61 -0.9 12,843 - GFF3195 0.61 +0.1 12,843 - GFF3195 0.61 -0.7 12,915 + GFF3195 0.65 -0.1 12,915 + GFF3195 0.65 -0.5 12,915 + GFF3195 0.65 -0.1 12,925 + GFF3195 0.65 -1.2 12,925 + GFF3195 0.65 +1.1 12,925 + GFF3195 0.65 -0.8 12,926 - GFF3195 0.65 -0.3 12,926 - GFF3195 0.65 +0.3 12,934 - GFF3195 0.66 +0.5 12,934 - GFF3195 0.66 -1.0 12,941 + GFF3195 0.66 +0.1 13,037 + GFF3195 0.71 -0.4 13,037 + GFF3195 0.71 -0.1 13,037 + GFF3195 0.71 -0.2 13,038 - GFF3195 0.71 -0.8 13,038 - GFF3195 0.71 -1.0 13,038 - GFF3195 0.71 +0.1 13,219 + GFF3195 0.80 -0.1 13,219 + GFF3195 0.80 -0.0 13,220 - GFF3195 0.80 +0.1 13,289 + GFF3195 0.84 -0.3 13,290 - GFF3195 0.84 -0.9 13,290 - GFF3195 0.84 +0.4 13,353 + GFF3195 0.87 -2.0 13,353 + GFF3195 0.87 -1.2 13,353 + GFF3195 0.87 -0.5 13,354 - GFF3195 0.87 -0.6 13,354 - GFF3195 0.87 -1.9 13,354 - GFF3195 0.87 -0.5 13,354 - GFF3195 0.87 -1.3 13,354 - GFF3195 0.87 -0.1 13,354 - GFF3195 0.87 -0.9 13,354 - GFF3195 0.87 -1.3 13,458 - -0.4 13,458 - +0.9 13,468 - -0.3 13,468 - +1.8 13,558 - +0.2 13,558 - +0.4 13,558 - -1.2 13,558 - -1.1 13,559 + +0.8 13,559 + -0.8 13,559 + -0.7 13,560 - -0.2 13,605 + +0.0 13,606 - -2.2 13,606 - -0.3 13,634 + +0.8 13,634 + -0.8 13,634 + -0.4 13,634 + -0.4 13,635 - +0.8 13,732 + -0.4 13,733 - -0.8 13,733 - -0.3 13,735 + +0.2 13,812 + -0.7 13,812 + -0.7 13,813 - -0.7 13,823 + -1.8 13,823 + -0.4 13,823 + -0.1 13,824 - -0.4 13,824 - -1.9 13,873 + -0.5 13,923 + +0.3 13,923 + -0.6 13,923 + -0.8 13,923 + -0.9 13,923 + -0.4 13,923 + -0.6 13,923 + +0.2 13,923 + +0.1 13,923 + -0.2 13,923 + +0.0 13,924 - +0.6 13,924 - +0.4 13,924 - -0.9 13,924 - -0.6 13,924 - +0.9 13,926 + -0.1 13,927 - -0.6 13,927 - -0.6 13,927 - -1.1 13,936 + +1.4 13,972 - +0.1 13,972 - -1.0 13,972 - -0.0 13,972 - -3.3 14,055 + -0.4 14,055 + -0.2 14,055 + +0.1 14,055 + -0.3 14,055 + +0.2 14,055 + +0.2 14,056 - -0.1 14,056 - -1.3 14,056 - -0.7 14,056 - +0.2 14,056 - -0.3 14,056 - -0.3 14,056 - -0.0 14,056 - +0.6 14,056 - -0.3 14,056 - +0.5 14,338 + GFF3196 0.18 +0.8 14,339 - GFF3196 0.18 -0.8 14,339 - GFF3196 0.18 -0.3 14,339 - GFF3196 0.18 +1.3 14,339 - GFF3196 0.18 -0.7 14,339 - GFF3196 0.18 +0.0 14,339 - GFF3196 0.18 +0.5 14,339 - GFF3196 0.18 -0.2 14,421 + GFF3196 0.27 +0.1 14,490 + GFF3196 0.34 -0.4 14,491 - GFF3196 0.34 -0.6 14,491 - GFF3196 0.34 -0.7
Or see this region's nucleotide sequence