Strain Fitness in Variovorax sp. SCN45 around GFF3187

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3186 and GFF3187 are separated by 355 nucleotidesGFF3187 and GFF3188 are separated by 79 nucleotidesGFF3188 and GFF3189 overlap by 11 nucleotides GFF3186 - FIG01046500: hypothetical protein, at 353 to 1,687 GFF3186 GFF3187 - hypothetical protein, at 2,043 to 4,073 GFF3187 GFF3188 - hypothetical protein, at 4,153 to 4,719 GFF3188 GFF3189 - hypothetical protein, at 4,709 to 5,812 GFF3189 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1.066 kb on + strand, within GFF3186at 1.066 kb on + strand, within GFF3186at 1.067 kb on - strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.112 kb on + strand, within GFF3186at 1.112 kb on + strand, within GFF3186at 1.148 kb on + strand, within GFF3186at 1.148 kb on + strand, within GFF3186at 1.149 kb on - strand, within GFF3186at 1.169 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.306 kb on - strand, within GFF3186at 1.306 kb on - strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.333 kb on - strand, within GFF3186at 1.333 kb on - strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.548 kb on - strand, within GFF3186at 1.548 kb on - strand, within GFF3186at 1.618 kb on + strandat 1.688 kb on - strandat 1.730 kb on + strandat 1.730 kb on + strandat 1.730 kb on + strandat 1.731 kb on - strandat 1.770 kb on + strandat 1.771 kb on - strandat 1.771 kb on - strandat 1.771 kb on - strandat 1.797 kb on + strandat 1.798 kb on - strandat 1.798 kb on - strandat 1.910 kb on - strandat 1.975 kb on + strandat 1.975 kb on + strandat 1.975 kb on + strandat 1.976 kb on - strandat 1.976 kb on - strandat 2.094 kb on + strandat 2.095 kb on - strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.120 kb on - strandat 2.120 kb on - strandat 2.183 kb on + strandat 2.184 kb on - strandat 2.184 kb on - strandat 2.250 kb on - strand, within GFF3187at 2.250 kb on - strand, within GFF3187at 2.256 kb on - strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.421 kb on - strand, within GFF3187at 2.421 kb on - strand, within GFF3187at 2.459 kb on - strand, within GFF3187at 2.459 kb on - strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.492 kb on - strand, within GFF3187at 2.492 kb on - strand, within GFF3187at 2.512 kb on + strand, within GFF3187at 2.563 kb on + strand, within GFF3187at 2.564 kb on - strand, within GFF3187at 2.564 kb on - strand, within GFF3187at 2.662 kb on + strand, within GFF3187at 2.663 kb on - strand, within GFF3187at 2.663 kb on - strand, within GFF3187at 2.814 kb on - strand, within GFF3187at 2.976 kb on + strand, within GFF3187at 2.976 kb on + strand, within GFF3187at 2.976 kb on + strand, within GFF3187at 2.977 kb on - strand, within GFF3187at 2.977 kb on - strand, within GFF3187at 2.981 kb on - strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.007 kb on + strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.008 kb on - strand, within GFF3187at 3.170 kb on - strand, within GFF3187at 3.170 kb on - strand, within GFF3187at 3.170 kb on - strand, within GFF3187at 3.253 kb on + strand, within GFF3187at 3.254 kb on - strand, within GFF3187at 3.254 kb on - strand, within GFF3187at 3.324 kb on + strand, within GFF3187at 3.369 kb on - strand, within GFF3187at 3.388 kb on + strand, within GFF3187at 3.389 kb on - strand, within GFF3187at 3.389 kb on - strand, within GFF3187at 3.389 kb on - strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.593 kb on + strand, within GFF3187at 3.594 kb on - strand, within GFF3187at 3.697 kb on + strand, within GFF3187at 3.698 kb on - strand, within GFF3187at 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.974 kb on + strandat 3.975 kb on - strandat 3.984 kb on - strandat 3.984 kb on - strandat 3.984 kb on - strandat 4.006 kb on - strandat 4.027 kb on + strandat 4.027 kb on + strandat 4.027 kb on + strandat 4.027 kb on + strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.145 kb on - strandat 4.186 kb on + strandat 4.264 kb on + strand, within GFF3188at 4.265 kb on - strand, within GFF3188at 4.295 kb on + strand, within GFF3188at 4.295 kb on + strand, within GFF3188at 4.295 kb on + strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.336 kb on + strand, within GFF3188at 4.423 kb on + strand, within GFF3188at 4.423 kb on + strand, within GFF3188at 4.424 kb on - strand, within GFF3188at 4.424 kb on - strand, within GFF3188at 4.444 kb on - strand, within GFF3188at 4.483 kb on + strand, within GFF3188at 4.484 kb on - strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.520 kb on - strand, within GFF3188at 4.678 kb on + strandat 4.678 kb on + strandat 4.679 kb on - strandat 4.679 kb on - strandat 4.679 kb on - strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.738 kb on - strandat 4.768 kb on + strandat 4.768 kb on + strandat 4.768 kb on + strandat 4.769 kb on - strandat 4.769 kb on - strandat 4.809 kb on + strandat 4.810 kb on - strandat 4.965 kb on + strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.976 kb on - strand, within GFF3189at 4.978 kb on + strand, within GFF3189at 4.978 kb on + strand, within GFF3189at 4.979 kb on - strand, within GFF3189at 5.023 kb on + strand, within GFF3189at 5.023 kb on + strand, within GFF3189at 5.024 kb on - strand, within GFF3189at 5.024 kb on - strand, within GFF3189at 5.064 kb on + strand, within GFF3189

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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1,066 + GFF3186 0.53 +0.2
1,066 + GFF3186 0.53 -1.4
1,067 - GFF3186 0.53 -0.2
1,070 + GFF3186 0.54 -0.2
1,070 + GFF3186 0.54 +0.5
1,070 + GFF3186 0.54 -0.2
1,070 + GFF3186 0.54 -0.5
1,070 + GFF3186 0.54 -0.3
1,070 + GFF3186 0.54 +0.3
1,070 + GFF3186 0.54 -0.4
1,070 + GFF3186 0.54 -0.4
1,070 + GFF3186 0.54 -0.3
1,071 - GFF3186 0.54 -1.4
1,071 - GFF3186 0.54 -0.1
1,071 - GFF3186 0.54 -0.0
1,071 - GFF3186 0.54 +1.4
1,071 - GFF3186 0.54 -0.8
1,071 - GFF3186 0.54 +0.1
1,071 - GFF3186 0.54 -0.5
1,071 - GFF3186 0.54 +0.3
1,071 - GFF3186 0.54 +0.5
1,071 - GFF3186 0.54 -0.7
1,112 + GFF3186 0.57 +0.4
1,112 + GFF3186 0.57 -0.2
1,148 + GFF3186 0.60 -0.6
1,148 + GFF3186 0.60 -0.3
1,149 - GFF3186 0.60 -0.1
1,169 + GFF3186 0.61 -1.1
1,223 + GFF3186 0.65 -0.6
1,223 + GFF3186 0.65 -0.2
1,223 + GFF3186 0.65 -0.7
1,224 - GFF3186 0.65 +0.1
1,224 - GFF3186 0.65 -0.4
1,224 - GFF3186 0.65 +0.2
1,305 + GFF3186 0.71 -2.4
1,305 + GFF3186 0.71 +0.2
1,305 + GFF3186 0.71 +1.4
1,306 - GFF3186 0.71 +0.8
1,306 - GFF3186 0.71 -0.3
1,332 + GFF3186 0.73 -0.8
1,332 + GFF3186 0.73 -1.4
1,332 + GFF3186 0.73 -0.6
1,332 + GFF3186 0.73 -0.2
1,332 + GFF3186 0.73 +0.2
1,332 + GFF3186 0.73 -0.2
1,333 - GFF3186 0.73 +0.6
1,333 - GFF3186 0.73 -0.8
1,547 + GFF3186 0.89 -2.2
1,547 + GFF3186 0.89 -0.5
1,547 + GFF3186 0.89 +0.5
1,547 + GFF3186 0.89 -1.2
1,547 + GFF3186 0.89 +0.1
1,547 + GFF3186 0.89 +0.4
1,548 - GFF3186 0.90 +0.4
1,548 - GFF3186 0.90 -0.1
1,618 + -0.4
1,688 - +0.3
1,730 + -0.2
1,730 + +1.8
1,730 + +0.1
1,731 - +0.2
1,770 + -0.2
1,771 - -0.0
1,771 - -0.5
1,771 - -0.2
1,797 + -0.7
1,798 - +0.3
1,798 - +0.4
1,910 - +0.8
1,975 + -0.3
1,975 + -0.2
1,975 + -0.2
1,976 - -1.3
1,976 - -0.3
2,094 + -1.0
2,095 - -0.3
2,119 + +1.8
2,119 + -0.6
2,119 + -0.2
2,119 + +0.3
2,119 + +0.3
2,119 + -1.1
2,120 - -0.1
2,120 - -0.5
2,183 + +0.4
2,184 - -0.5
2,184 - +0.3
2,250 - GFF3187 0.10 -0.3
2,250 - GFF3187 0.10 -0.9
2,256 - GFF3187 0.10 -0.2
2,420 + GFF3187 0.19 -0.7
2,420 + GFF3187 0.19 -0.1
2,420 + GFF3187 0.19 -0.8
2,421 - GFF3187 0.19 +0.3
2,421 - GFF3187 0.19 +0.1
2,459 - GFF3187 0.20 +0.8
2,459 - GFF3187 0.20 -2.4
2,491 + GFF3187 0.22 +0.4
2,491 + GFF3187 0.22 +0.7
2,491 + GFF3187 0.22 -0.4
2,492 - GFF3187 0.22 +1.4
2,492 - GFF3187 0.22 -1.7
2,512 + GFF3187 0.23 -1.3
2,563 + GFF3187 0.26 -1.0
2,564 - GFF3187 0.26 +0.5
2,564 - GFF3187 0.26 -0.4
2,662 + GFF3187 0.30 -0.0
2,663 - GFF3187 0.31 +0.6
2,663 - GFF3187 0.31 -0.5
2,814 - GFF3187 0.38 -1.0
2,976 + GFF3187 0.46 -0.2
2,976 + GFF3187 0.46 +0.6
2,976 + GFF3187 0.46 +0.6
2,977 - GFF3187 0.46 +0.0
2,977 - GFF3187 0.46 -0.4
2,981 - GFF3187 0.46 -1.5
3,007 + GFF3187 0.47 -1.2
3,007 + GFF3187 0.47 +0.2
3,007 + GFF3187 0.47 +0.3
3,007 + GFF3187 0.47 -0.4
3,007 + GFF3187 0.47 -0.4
3,007 + GFF3187 0.47 +0.1
3,007 + GFF3187 0.47 +0.2
3,007 + GFF3187 0.47 -0.7
3,008 - GFF3187 0.48 -0.0
3,008 - GFF3187 0.48 -0.3
3,008 - GFF3187 0.48 +0.2
3,008 - GFF3187 0.48 -0.4
3,008 - GFF3187 0.48 -0.7
3,008 - GFF3187 0.48 -1.5
3,008 - GFF3187 0.48 -0.1
3,008 - GFF3187 0.48 -0.2
3,008 - GFF3187 0.48 +0.1
3,008 - GFF3187 0.48 +0.1
3,170 - GFF3187 0.55 -0.6
3,170 - GFF3187 0.55 -0.0
3,170 - GFF3187 0.55 -1.2
3,253 + GFF3187 0.60 +0.4
3,254 - GFF3187 0.60 -0.7
3,254 - GFF3187 0.60 -1.5
3,324 + GFF3187 0.63 +0.6
3,369 - GFF3187 0.65 -1.7
3,388 + GFF3187 0.66 -1.4
3,389 - GFF3187 0.66 -1.7
3,389 - GFF3187 0.66 +0.0
3,389 - GFF3187 0.66 -1.0
3,542 + GFF3187 0.74 -0.7
3,542 + GFF3187 0.74 -1.1
3,542 + GFF3187 0.74 -1.2
3,542 + GFF3187 0.74 -0.5
3,542 + GFF3187 0.74 -0.5
3,542 + GFF3187 0.74 -1.3
3,542 + GFF3187 0.74 -0.9
3,543 - GFF3187 0.74 +0.3
3,543 - GFF3187 0.74 -0.1
3,543 - GFF3187 0.74 -0.5
3,543 - GFF3187 0.74 +0.0
3,543 - GFF3187 0.74 -1.7
3,593 + GFF3187 0.76 -0.1
3,594 - GFF3187 0.76 -0.5
3,697 + GFF3187 0.81 -0.5
3,698 - GFF3187 0.81 +0.2
3,949 + +0.1
3,949 + -1.2
3,949 + +1.4
3,949 + -0.3
3,949 + -0.6
3,949 + +0.7
3,974 + +0.4
3,975 - -0.4
3,984 - +0.2
3,984 - -0.0
3,984 - +0.5
4,006 - -0.3
4,027 + +0.6
4,027 + -0.7
4,027 + -0.1
4,027 + -0.2
4,028 - -0.6
4,028 - -0.4
4,028 - +0.2
4,028 - -0.2
4,028 - -0.4
4,145 - +0.6
4,186 + -0.4
4,264 + GFF3188 0.20 -0.1
4,265 - GFF3188 0.20 -0.4
4,295 + GFF3188 0.25 -0.0
4,295 + GFF3188 0.25 -0.2
4,295 + GFF3188 0.25 -0.2
4,296 - GFF3188 0.25 -1.0
4,296 - GFF3188 0.25 -0.3
4,296 - GFF3188 0.25 +1.4
4,296 - GFF3188 0.25 -0.5
4,296 - GFF3188 0.25 -0.7
4,336 + GFF3188 0.32 +0.5
4,423 + GFF3188 0.48 +0.3
4,423 + GFF3188 0.48 -0.3
4,424 - GFF3188 0.48 -0.1
4,424 - GFF3188 0.48 -0.0
4,444 - GFF3188 0.51 -0.6
4,483 + GFF3188 0.58 +0.8
4,484 - GFF3188 0.58 +0.3
4,485 + GFF3188 0.59 +0.5
4,485 + GFF3188 0.59 +0.3
4,485 + GFF3188 0.59 -0.6
4,485 + GFF3188 0.59 +0.4
4,485 + GFF3188 0.59 +0.5
4,485 + GFF3188 0.59 +0.2
4,486 - GFF3188 0.59 +0.9
4,486 - GFF3188 0.59 +0.0
4,486 - GFF3188 0.59 -1.3
4,486 - GFF3188 0.59 +0.8
4,486 - GFF3188 0.59 -0.7
4,520 - GFF3188 0.65 +0.2
4,678 + -0.2
4,678 + -0.9
4,679 - -1.7
4,679 - -0.6
4,679 - -0.4
4,737 + +0.2
4,737 + -0.7
4,737 + +0.5
4,737 + +0.2
4,737 + -0.9
4,738 - -0.4
4,768 + +0.3
4,768 + +0.2
4,768 + +0.0
4,769 - -0.1
4,769 - +0.3
4,809 + +2.8
4,810 - +0.2
4,965 + GFF3189 0.23 -0.7
4,966 - GFF3189 0.23 -1.8
4,966 - GFF3189 0.23 +2.3
4,966 - GFF3189 0.23 +0.0
4,966 - GFF3189 0.23 +0.6
4,975 + GFF3189 0.24 -0.6
4,975 + GFF3189 0.24 -0.6
4,975 + GFF3189 0.24 +0.8
4,975 + GFF3189 0.24 -0.2
4,976 - GFF3189 0.24 -0.5
4,978 + GFF3189 0.24 -1.1
4,978 + GFF3189 0.24 -0.5
4,979 - GFF3189 0.24 -0.5
5,023 + GFF3189 0.28 +0.0
5,023 + GFF3189 0.28 +0.6
5,024 - GFF3189 0.29 +0.4
5,024 - GFF3189 0.29 -1.8
5,064 + GFF3189 0.32 +0.6

Or see this region's nucleotide sequence