Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3133 and GFF3134 are separated by 5 nucleotides GFF3134 and GFF3135 are separated by 88 nucleotides GFF3135 and GFF3136 are separated by 6 nucleotides GFF3136 and GFF3137 are separated by 15 nucleotides
GFF3133 - hypothetical protein, at 563,479 to 564,624
GFF3133
GFF3134 - no description, at 564,630 to 564,902
GFF3134
GFF3135 - no description, at 564,991 to 565,530
GFF3135
GFF3136 - no description, at 565,537 to 566,523
GFF3136
GFF3137 - hypothetical protein, at 566,539 to 568,008
GFF3137
Position (kb) 565
566
567 Strain fitness (log2 ratio) -1
0
1
2 at 565.054 kb on + strand, within GFF3135 at 565.055 kb on - strand, within GFF3135 at 565.055 kb on - strand, within GFF3135 at 565.078 kb on + strand, within GFF3135 at 565.079 kb on - strand, within GFF3135 at 565.103 kb on - strand, within GFF3135 at 565.286 kb on + strand, within GFF3135 at 565.287 kb on - strand, within GFF3135 at 565.287 kb on - strand, within GFF3135 at 565.318 kb on + strand, within GFF3135 at 565.377 kb on - strand, within GFF3135 at 565.639 kb on + strand, within GFF3136 at 565.650 kb on + strand, within GFF3136 at 565.651 kb on - strand, within GFF3136 at 565.651 kb on - strand, within GFF3136 at 565.718 kb on + strand, within GFF3136 at 565.719 kb on - strand, within GFF3136 at 565.719 kb on - strand, within GFF3136 at 565.775 kb on + strand, within GFF3136 at 565.775 kb on + strand, within GFF3136 at 565.776 kb on - strand, within GFF3136 at 565.776 kb on - strand, within GFF3136 at 565.991 kb on + strand, within GFF3136 at 565.992 kb on - strand, within GFF3136 at 565.992 kb on - strand, within GFF3136 at 566.171 kb on + strand, within GFF3136 at 566.385 kb on - strand, within GFF3136 at 566.526 kb on - strand at 566.526 kb on - strand at 566.526 kb on - strand at 566.540 kb on + strand at 566.887 kb on + strand, within GFF3137 at 566.887 kb on + strand, within GFF3137 at 567.170 kb on + strand, within GFF3137 at 567.171 kb on - strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.200 kb on + strand, within GFF3137
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 565,054 + GFF3135 0.12 -1.0 565,055 - GFF3135 0.12 +0.1 565,055 - GFF3135 0.12 -0.5 565,078 + GFF3135 0.16 -0.7 565,079 - GFF3135 0.16 -0.1 565,103 - GFF3135 0.21 -0.4 565,286 + GFF3135 0.55 -0.6 565,287 - GFF3135 0.55 -0.5 565,287 - GFF3135 0.55 -0.5 565,318 + GFF3135 0.61 -0.7 565,377 - GFF3135 0.71 +0.1 565,639 + GFF3136 0.10 +0.0 565,650 + GFF3136 0.11 -0.5 565,651 - GFF3136 0.12 +1.1 565,651 - GFF3136 0.12 +0.7 565,718 + GFF3136 0.18 +0.3 565,719 - GFF3136 0.18 -0.7 565,719 - GFF3136 0.18 -0.1 565,775 + GFF3136 0.24 +0.2 565,775 + GFF3136 0.24 +0.6 565,776 - GFF3136 0.24 +0.2 565,776 - GFF3136 0.24 -0.1 565,991 + GFF3136 0.46 +2.0 565,992 - GFF3136 0.46 +0.4 565,992 - GFF3136 0.46 +0.6 566,171 + GFF3136 0.64 -0.5 566,385 - GFF3136 0.86 +1.2 566,526 - +0.2 566,526 - +0.6 566,526 - -0.8 566,540 + -0.6 566,887 + GFF3137 0.24 -0.6 566,887 + GFF3137 0.24 -0.3 567,170 + GFF3137 0.43 -0.4 567,171 - GFF3137 0.43 +0.4 567,200 + GFF3137 0.45 -1.2 567,200 + GFF3137 0.45 -0.3 567,200 + GFF3137 0.45 +0.8 567,200 + GFF3137 0.45 -0.3
Or see this region's nucleotide sequence