Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF302 and GFF303 are separated by 48 nucleotides GFF303 and GFF304 are separated by 117 nucleotides GFF304 and GFF305 are separated by 2 nucleotides
GFF302 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 335,193 to 336,494
GFF302
GFF303 - Probable transcriptional regulatory protein YebC, at 336,543 to 337,268
GFF303
GFF304 - Ubiquinone/menaquinone biosynthesis methyltransferase family protein, at 337,386 to 338,174
GFF304
GFF305 - uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5, at 338,177 to 339,214
GFF305
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1 at 335.677 kb on + strand, within GFF302 at 335.677 kb on + strand, within GFF302 at 335.677 kb on + strand, within GFF302 at 335.791 kb on + strand, within GFF302 at 336.100 kb on + strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.409 kb on + strand at 336.480 kb on + strand at 336.480 kb on + strand at 336.480 kb on + strand at 336.481 kb on - strand at 336.487 kb on - strand at 336.487 kb on - strand at 336.487 kb on - strand at 336.544 kb on + strand at 336.568 kb on + strand at 336.569 kb on - strand at 336.910 kb on + strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.025 kb on - strand, within GFF303 at 337.241 kb on + strand at 337.241 kb on + strand at 337.241 kb on + strand at 337.241 kb on + strand at 337.242 kb on - strand at 337.242 kb on - strand at 337.242 kb on - strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.276 kb on + strand at 337.276 kb on + strand at 337.277 kb on - strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.316 kb on - strand at 337.316 kb on - strand at 337.316 kb on - strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.377 kb on - strand at 337.380 kb on - strand at 337.455 kb on + strand at 337.455 kb on + strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.458 kb on + strand at 337.458 kb on + strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.521 kb on + strand, within GFF304 at 337.521 kb on + strand, within GFF304 at 337.522 kb on - strand, within GFF304 at 337.566 kb on + strand, within GFF304 at 337.812 kb on + strand, within GFF304 at 337.812 kb on + strand, within GFF304 at 337.812 kb on + strand, within GFF304 at 337.812 kb on + strand, within GFF304 at 337.905 kb on - strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.947 kb on + strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 337.948 kb on - strand, within GFF304 at 338.019 kb on + strand, within GFF304 at 338.019 kb on + strand, within GFF304 at 338.020 kb on - strand, within GFF304 at 338.020 kb on - strand, within GFF304 at 338.020 kb on - strand, within GFF304 at 338.023 kb on - strand, within GFF304 at 338.133 kb on + strand at 338.133 kb on + strand at 338.134 kb on - strand at 338.134 kb on - strand at 338.135 kb on + strand at 338.135 kb on + strand at 338.135 kb on + strand at 338.136 kb on - strand at 338.156 kb on + strand at 338.157 kb on - strand at 338.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 335,677 + GFF302 0.37 +0.3 335,677 + GFF302 0.37 +0.3 335,677 + GFF302 0.37 -2.2 335,791 + GFF302 0.46 -0.3 336,100 + GFF302 0.70 -1.0 336,101 - GFF302 0.70 +1.3 336,101 - GFF302 0.70 -1.5 336,101 - GFF302 0.70 +0.3 336,409 + -1.0 336,480 + -2.3 336,480 + +0.3 336,480 + -0.3 336,481 - +0.3 336,487 - -1.0 336,487 - +0.3 336,487 - +0.3 336,544 + +0.3 336,568 + +0.3 336,569 - -0.2 336,910 + GFF303 0.51 -1.0 336,911 - GFF303 0.51 -0.9 336,911 - GFF303 0.51 -0.7 336,911 - GFF303 0.51 -0.3 337,024 + GFF303 0.66 -1.0 337,024 + GFF303 0.66 -0.3 337,024 + GFF303 0.66 -0.4 337,025 - GFF303 0.66 -1.5 337,241 + +0.2 337,241 + -0.3 337,241 + -1.4 337,241 + -2.0 337,242 - -1.7 337,242 - -1.1 337,242 - +1.6 337,256 + -1.3 337,256 + -2.5 337,256 + -1.5 337,256 + -1.7 337,257 - -0.7 337,257 - -1.2 337,257 - -1.5 337,257 - -0.3 337,257 - -1.0 337,276 + -0.6 337,276 + -1.3 337,277 - -0.3 337,315 + -0.3 337,315 + -0.5 337,315 + -0.7 337,315 + -1.3 337,316 - +0.1 337,316 - +1.7 337,316 - -0.2 337,376 + -1.0 337,376 + -0.9 337,376 + +0.1 337,376 + -0.1 337,376 + -0.1 337,376 + -1.0 337,377 - -0.6 337,380 - -1.0 337,455 + -0.9 337,455 + -0.7 337,456 - -0.6 337,456 - -0.3 337,456 - -0.9 337,456 - -0.9 337,458 + -0.6 337,458 + -0.7 337,459 - -1.3 337,459 - -0.2 337,459 - -0.4 337,459 - -0.5 337,459 - +0.1 337,459 - +0.7 337,459 - +1.3 337,521 + GFF304 0.17 -0.3 337,521 + GFF304 0.17 +0.1 337,522 - GFF304 0.17 -0.2 337,566 + GFF304 0.23 +0.8 337,812 + GFF304 0.54 -0.6 337,812 + GFF304 0.54 +0.8 337,812 + GFF304 0.54 +1.5 337,812 + GFF304 0.54 -0.9 337,905 - GFF304 0.66 +0.0 337,947 + GFF304 0.71 +0.6 337,947 + GFF304 0.71 -0.1 337,947 + GFF304 0.71 -1.1 337,947 + GFF304 0.71 -1.0 337,947 + GFF304 0.71 -0.0 337,947 + GFF304 0.71 +0.3 337,947 + GFF304 0.71 -0.8 337,947 + GFF304 0.71 -0.6 337,947 + GFF304 0.71 -0.4 337,948 - GFF304 0.71 +0.3 337,948 - GFF304 0.71 +1.3 337,948 - GFF304 0.71 -0.0 337,948 - GFF304 0.71 -0.4 337,948 - GFF304 0.71 +0.3 337,948 - GFF304 0.71 -0.5 337,948 - GFF304 0.71 -0.0 338,019 + GFF304 0.80 -0.5 338,019 + GFF304 0.80 -0.8 338,020 - GFF304 0.80 -1.9 338,020 - GFF304 0.80 +0.1 338,020 - GFF304 0.80 -0.6 338,023 - GFF304 0.81 +0.1 338,133 + -0.5 338,133 + -0.8 338,134 - -0.4 338,134 - -0.3 338,135 + -1.4 338,135 + -1.0 338,135 + +0.2 338,136 - -0.3 338,156 + -1.7 338,157 - -0.6 338,232 - +0.7
Or see this region's nucleotide sequence