Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3022 and GFF3023 are separated by 23 nucleotides GFF3023 and GFF3024 are separated by 13 nucleotides GFF3024 and GFF3025 overlap by 13 nucleotides
GFF3022 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 450,147 to 451,199
GFF3022
GFF3023 - C4-dicarboxylate transport protein, at 451,223 to 452,497
GFF3023
GFF3024 - Aspartate racemase (EC 5.1.1.13), at 452,511 to 453,245
GFF3024
GFF3025 - Proton/sodium-glutamate symport protein, at 453,233 to 454,702
GFF3025
Position (kb) 451
452
453 Strain fitness (log2 ratio) -1
0
1
2 at 450.756 kb on + strand, within GFF3022 at 450.756 kb on + strand, within GFF3022 at 450.757 kb on - strand, within GFF3022 at 450.757 kb on - strand, within GFF3022 at 450.892 kb on - strand, within GFF3022 at 451.125 kb on + strand at 451.242 kb on - strand at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.353 kb on - strand, within GFF3023 at 451.353 kb on - strand, within GFF3023 at 451.817 kb on + strand, within GFF3023 at 451.817 kb on + strand, within GFF3023 at 451.818 kb on - strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.912 kb on - strand, within GFF3023 at 452.201 kb on + strand, within GFF3023 at 452.201 kb on + strand, within GFF3023 at 452.234 kb on + strand, within GFF3023 at 452.234 kb on + strand, within GFF3023 at 452.358 kb on - strand, within GFF3023 at 452.490 kb on - strand at 452.495 kb on + strand at 452.495 kb on + strand at 452.917 kb on - strand, within GFF3024 at 453.311 kb on + strand at 453.312 kb on - strand at 453.312 kb on - strand at 453.356 kb on + strand at 453.356 kb on + strand at 453.356 kb on + strand at 453.356 kb on + strand at 453.356 kb on + strand at 453.356 kb on + strand at 453.357 kb on - strand at 453.357 kb on - strand at 453.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 450,756 + GFF3022 0.58 -0.1 450,756 + GFF3022 0.58 -0.1 450,757 - GFF3022 0.58 +0.3 450,757 - GFF3022 0.58 +0.3 450,892 - GFF3022 0.71 +0.2 451,125 + +0.2 451,242 - +1.0 451,352 + GFF3023 0.10 +0.4 451,352 + GFF3023 0.10 +0.1 451,352 + GFF3023 0.10 -0.4 451,352 + GFF3023 0.10 +2.4 451,353 - GFF3023 0.10 +0.0 451,353 - GFF3023 0.10 +0.3 451,817 + GFF3023 0.47 +0.6 451,817 + GFF3023 0.47 +0.6 451,818 - GFF3023 0.47 -0.1 451,911 + GFF3023 0.54 -0.3 451,911 + GFF3023 0.54 -0.2 451,911 + GFF3023 0.54 -0.6 451,912 - GFF3023 0.54 +0.0 452,201 + GFF3023 0.77 +0.7 452,201 + GFF3023 0.77 +1.0 452,234 + GFF3023 0.79 +0.4 452,234 + GFF3023 0.79 +0.3 452,358 - GFF3023 0.89 -0.3 452,490 - -0.8 452,495 + -0.5 452,495 + -1.6 452,917 - GFF3024 0.55 +0.0 453,311 + -0.2 453,312 - -0.5 453,312 - +0.9 453,356 + -0.4 453,356 + -0.1 453,356 + +0.1 453,356 + -0.4 453,356 + -0.5 453,356 + -0.2 453,357 - -1.0 453,357 - -0.3 453,357 - -0.1
Or see this region's nucleotide sequence